Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10627
         (755 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24610.1 68416.m03091 kelch repeat-containing F-box family pr...    28   5.8  
At5g04930.1 68418.m00521 phospholipid-transporting ATPase 1 / am...    28   7.7  

>At3g24610.1 68416.m03091 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 445

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 395 IFIIDKWDNLPIYFIPELTKWDK 327
           I+++D WD    Y++P  + W+K
Sbjct: 248 IYVVDSWDVGSYYYLPSKSIWEK 270


>At5g04930.1 68418.m00521 phospholipid-transporting ATPase 1 /
            aminophospholipid flippase 1 / magnesium-ATPase 1 (ALA1)
            nearly identical to SP|P98204 Phospholipid-transporting
            ATPase 1 (EC 3.6.3.1) (Aminophospholipid flippase 1)
            {Arabidopsis thaliana}; contains InterPro accession
            IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 1158

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = -1

Query: 434  YCATLFYVNIFL*IFIIDKWDNLPIYFIPELTKWDKTFSTSNIDIIYFLNNHFTVIIVRK 255
            Y  TLF+  +     I   W +  I+FIP    W  T  TS++  ++ +     V++V  
Sbjct: 994  YSTTLFWYTM-----IDTIWQSAAIFFIPMFAYWGSTIDTSSLGDLWTI---AAVVVVNL 1045

Query: 254  FIYLHISR 231
             + + + R
Sbjct: 1046 HLAMDVIR 1053


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,025,917
Number of Sequences: 28952
Number of extensions: 295036
Number of successful extensions: 546
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)