Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10618X
(469 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 76 3e-15
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 39 4e-04
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 29 0.47
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 26 2.5
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 26 2.5
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 26 3.3
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 25 5.8
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 25 7.6
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch... 25 7.6
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 75.8 bits (178), Expect = 3e-15
Identities = 31/71 (43%), Positives = 49/71 (69%)
Frame = +1
Query: 256 KITDQIYCCRSGSGADTQAIADIVTYHLDFHKMGLGDPPLVETAAAIFRERCYNYRDSLV 435
++TD I+CCRSGS ADTQ +AD++ Y+L +++ G P V TAA + E CY ++ L
Sbjct: 60 QLTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLS 119
Query: 436 AGILVAVWGKR 468
AG++VA + ++
Sbjct: 120 AGLIVAGYDEK 130
Score = 52.0 bits (119), Expect = 4e-08
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +2
Query: 149 GTSIMACEFDGGVVIGADARTTTGAYIANRVTDKL 253
GT+I A + GV++ AD+RTT GAYIANRVTDKL
Sbjct: 24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKL 58
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 38.7 bits (86), Expect = 4e-04
Identities = 14/64 (21%), Positives = 36/64 (56%)
Frame = +1
Query: 259 ITDQIYCCRSGSGADTQAIADIVTYHLDFHKMGLGDPPLVETAAAIFRERCYNYRDSLVA 438
I+ I+C +G+ ADT+ + +++ +++ H + P V TA + ++ + Y+ + A
Sbjct: 72 ISPNIWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGA 131
Query: 439 GILV 450
+++
Sbjct: 132 YLVL 135
Score = 31.9 bits (69), Expect = 0.050
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 143 STGTSIMACEFDGGVVIGADARTTTGAYIANRVTDKL 253
STGT+I+ +V+GAD R T G IA++ KL
Sbjct: 33 STGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKL 69
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 28.7 bits (61), Expect = 0.47
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 149 GTSIMACEFDGGVVIGADARTTTGAYIANRVTDKL 253
GT+ +A + G+V+ D+R + G IA++ K+
Sbjct: 61 GTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKV 95
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 26.2 bits (55), Expect = 2.5
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 94 NTYSDPWPTGVDER 135
N Y DPW G DER
Sbjct: 141 NVYCDPWTIGYDER 154
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 26.2 bits (55), Expect = 2.5
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 299 APDPERQQYI-WSVIFSAYR*LDWRCKRLLWYGHQL 195
APD R+++I W DW R LW+GH++
Sbjct: 495 APDMSRREFIRWMENIQ-----DWCISRQLWWGHRI 525
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 25.8 bits (54), Expect = 3.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 94 NTYSDPWPTGVDERPS*YGN 153
+ Y DPW G DER YGN
Sbjct: 153 HVYCDPWTIGYDER---YGN 169
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 25.0 bits (52), Expect = 5.8
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -3
Query: 236 DWRCKRLLWYGHQL 195
DW R +W+GHQ+
Sbjct: 436 DWCISRQIWWGHQI 449
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 24.6 bits (51), Expect = 7.6
Identities = 12/54 (22%), Positives = 23/54 (42%)
Frame = +1
Query: 220 RLHRQSSHR*AEKITDQIYCCRSGSGADTQAIADIVTYHLDFHKMGLGDPPLVE 381
+L S+ + + + + +G AD + + D HK+ L DP +E
Sbjct: 53 KLQNVSNFQKIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIE 106
>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 24.6 bits (51), Expect = 7.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 457 IQQLKYQPPMSHGSCNSALGILLQQFPLVVDLL 359
+ + KYQ +S+ S ++ F L VDLL
Sbjct: 87 VDEKKYQKALSYARDKSWFSTIVSTFTLAVDLL 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,990,953
Number of Sequences: 5004
Number of extensions: 40565
Number of successful extensions: 79
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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