Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10618X
(469 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 69 1e-12
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 68 4e-12
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 48 5e-06
09_04_0728 - 19771975-19772093,19772131-19772224,19772322-197725... 29 1.4
03_01_0432 + 3339235-3339915,3340313-3340561,3341071-3341139,334... 28 4.3
08_02_1230 + 25419533-25420446,25421098-25421279,25422197-254225... 27 5.7
02_05_0530 - 29804939-29805547,29805658-29805885,29805978-298062... 27 5.7
09_04_0587 + 18782870-18783828,18784084-18784265,18785283-187856... 27 7.5
02_01_0589 - 4355207-4355410,4355574-4355747,4356234-4356344,435... 27 7.5
07_01_0636 + 4761858-4762421,4763596-4763819,4763961-4764309,476... 27 10.0
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 69.3 bits (162), Expect = 1e-12
Identities = 32/70 (45%), Positives = 43/70 (61%)
Frame = +1
Query: 256 KITDQIYCCRSGSGADTQAIADIVTYHLDFHKMGLGDPPLVETAAAIFRERCYNYRDSLV 435
++TD +Y CRSGS ADTQ I+D V Y L H + LG P V+ AA + R Y ++ L
Sbjct: 61 QLTDNVYICRSGSAADTQVISDYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQ 120
Query: 436 AGILVAVWGK 465
AG++V W K
Sbjct: 121 AGMIVGGWDK 130
Score = 52.4 bits (120), Expect = 2e-07
Identities = 21/38 (55%), Positives = 30/38 (78%)
Frame = +2
Query: 140 HSTGTSIMACEFDGGVVIGADARTTTGAYIANRVTDKL 253
H GT+I+ +DGGVV+ AD+RT+TG Y+ANR +DK+
Sbjct: 22 HRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKI 59
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 67.7 bits (158), Expect = 4e-12
Identities = 31/70 (44%), Positives = 43/70 (61%)
Frame = +1
Query: 256 KITDQIYCCRSGSGADTQAIADIVTYHLDFHKMGLGDPPLVETAAAIFRERCYNYRDSLV 435
++TD +Y CRSGS ADTQ I++ V Y L H + LG P V+ AA + R Y ++ L
Sbjct: 61 QLTDNVYVCRSGSAADTQVISEYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQ 120
Query: 436 AGILVAVWGK 465
AG++V W K
Sbjct: 121 AGMIVGGWDK 130
Score = 52.4 bits (120), Expect = 2e-07
Identities = 21/38 (55%), Positives = 30/38 (78%)
Frame = +2
Query: 140 HSTGTSIMACEFDGGVVIGADARTTTGAYIANRVTDKL 253
H GT+I+ +DGGVV+ AD+RT+TG Y+ANR +DK+
Sbjct: 22 HRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKI 59
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 47.6 bits (108), Expect = 5e-06
Identities = 18/60 (30%), Positives = 35/60 (58%)
Frame = +1
Query: 271 IYCCRSGSGADTQAIADIVTYHLDFHKMGLGDPPLVETAAAIFRERCYNYRDSLVAGILV 450
IYCC +G+ ADT+A+ D+V+ L H+ G V T+ + + ++Y+ + A +++
Sbjct: 79 IYCCGAGTAADTEAVTDMVSSQLQLHRYATGRESRVVTSLTLLKSHLFSYQGHVSAALVL 138
Score = 37.9 bits (84), Expect = 0.004
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +2
Query: 146 TGTSIMACEFDGGVVIGADARTTTGAYIANRVTDKL 253
TGT+I+ F GVV+GAD R T G +A++ +K+
Sbjct: 37 TGTTIVGLVFQDGVVLGADTRATEGPIVADKNCEKI 72
>09_04_0728 -
19771975-19772093,19772131-19772224,19772322-19772507,
19772596-19772767,19772854-19772983,19773060-19773136,
19774109-19774194,19774508-19774585,19775916-19776045,
19776379-19776423,19776508-19776618,19776801-19777057,
19777153-19777302,19777899-19778008,19778426-19778546
Length = 621
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/40 (25%), Positives = 26/40 (65%)
Frame = +2
Query: 137 PHSTGTSIMACEFDGGVVIGADARTTTGAYIANRVTDKLR 256
P+ TG+SI+A ++ GV++ +D + G+ + + ++++
Sbjct: 365 PYVTGSSIIALKYKDGVIMASDTGASYGSTLRYKSVERIK 404
>03_01_0432 +
3339235-3339915,3340313-3340561,3341071-3341139,
3341292-3341414,3341526-3341738
Length = 444
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1
Query: 64 TTSKMATSVINTYSDPW 114
TTS ATSVI Y+ PW
Sbjct: 138 TTSSSATSVITEYASPW 154
>08_02_1230 +
25419533-25420446,25421098-25421279,25422197-25422543,
25423327-25423557,25423680-25423775,25423934-25424044
Length = 626
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 339 GLPQDGVRRSTTSGNCCSNIPRALLQLP*LIGG 437
GLP DG ++ G CC +P +QLP I G
Sbjct: 192 GLPLDGFDYASILGQCC-ELPVGYVQLPVGIAG 223
>02_05_0530 -
29804939-29805547,29805658-29805885,29805978-29806261,
29807095-29807199,29807648-29808155
Length = 577
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +3
Query: 78 GDISDQYLL*SLAYRSG*TPLIVRELQSWHASLMVESSLELMPVP 212
G + Q LL S AY+ G T + VR + HA +V +S EL+P P
Sbjct: 61 GRAAVQRLLHS-AYKRGDTSVEVRVRRPAHAQQLVTTSGELLPSP 104
>09_04_0587 +
18782870-18783828,18784084-18784265,18785283-18785629,
18786497-18786739
Length = 576
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 339 GLPQDGVRRSTTSGNCCSNIPRALLQLP*LIGG 437
GLP DG ++ G CC +P +QLP + G
Sbjct: 207 GLPLDGFDYASILGQCC-ELPVGYVQLPVGVAG 238
>02_01_0589 -
4355207-4355410,4355574-4355747,4356234-4356344,
4356506-4356712,4357609-4357716,4358442-4358698,
4359120-4359241,4359782-4360001,4360877-4361130,
4361782-4362015,4362143-4362189
Length = 645
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 377 WKLLQQYSESAVTTTVTHWWLVF*LLYGARG 469
WK+ +++ + V WWL LL+ ARG
Sbjct: 28 WKVAEEWRQQGAAP-VGSWWLHLLLLFAARG 57
>07_01_0636 +
4761858-4762421,4763596-4763819,4763961-4764309,
4764648-4765331
Length = 606
Score = 26.6 bits (56), Expect = 10.0
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Frame = +2
Query: 173 FDGGVVIGADARTTTGA------YIANRVTDKLRKSLTRYTAAAQDPVPTLKP 313
F GG G D T+T A I + D + S TAAA +P P L P
Sbjct: 132 FQGGGGGGGDEMTSTAAAPTPALIIGSSSGDGVSPSRVAVTAAAAEPTPALAP 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,883,306
Number of Sequences: 37544
Number of extensions: 313488
Number of successful extensions: 707
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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