Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10618X
         (469 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4103| Best HMM Match : Proteasome (HMM E-Value=8.2e-05)             49   2e-06
SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.010
SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)                  35   0.029
SB_28271| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)                 29   2.5  

>SB_4103| Best HMM Match : Proteasome (HMM E-Value=8.2e-05)
          Length = 131

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 21/34 (61%), Positives = 25/34 (73%)
 Frame = +1

Query: 364 DPPLVETAAAIFRERCYNYRDSLVAGILVAVWGK 465
           +P LV+TAA +FRE CY YRD L AGI+ A W K
Sbjct: 3   EPVLVKTAANLFREMCYGYRDQLSAGIICAGWDK 36


>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 36.7 bits (81), Expect = 0.010
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = +2

Query: 149 GTSIMACEFDGGVVIGADARTTTGAYIANRVTDKL 253
           GT+ +A +F  GV++  D+R T G+YIA++   K+
Sbjct: 28  GTTTLAFKFKHGVIVAVDSRATAGSYIASQTVKKV 62


>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
          Length = 938

 Score = 35.1 bits (77), Expect = 0.029
 Identities = 17/51 (33%), Positives = 30/51 (58%)
 Frame = +2

Query: 107  ILGLPEWMNAPHSTGTSIMACEFDGGVVIGADARTTTGAYIANRVTDKLRK 259
            I+ L +W   P +TGTS++  +F+GGV++ AD   + G+    R   +L +
Sbjct: 863  IMKLADWY--PTTTGTSVLGIKFNGGVLMAADTLGSYGSLARYRNISRLMR 911


>SB_28271| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)
          Length = 686

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 296 PDPERQQYIWSVIF 255
           PDPE+Q Y+W+ +F
Sbjct: 252 PDPEKQVYVWTAVF 265


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,168,712
Number of Sequences: 59808
Number of extensions: 311708
Number of successful extensions: 731
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)