Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10618X
         (469 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome be...    76   1e-14
Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical pr...    45   3e-05
Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AF038613-2|AAB92049.1|  477|Caenorhabditis elegans Cytochrome p4...    27   6.7  
Z35598-7|CAA84650.2|  325|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome beta
           subunit protein 1 protein.
          Length = 239

 Score = 76.2 bits (179), Expect = 1e-14
 Identities = 35/67 (52%), Positives = 44/67 (65%)
 Frame = +1

Query: 259 ITDQIYCCRSGSGADTQAIADIVTYHLDFHKMGLGDPPLVETAAAIFRERCYNYRDSLVA 438
           ITD +  CRSGS ADTQAIADI  YH+D + M    P  +  ++ IFR+  YNYR+ L A
Sbjct: 60  ITDNMVVCRSGSAADTQAIADIAKYHIDVYTMTENKPVTIYRSSQIFRQFLYNYREQLSA 119

Query: 439 GILVAVW 459
            +LVA W
Sbjct: 120 SVLVAGW 126



 Score = 50.8 bits (116), Expect = 5e-07
 Identities = 19/37 (51%), Positives = 32/37 (86%)
 Frame = +2

Query: 143 STGTSIMACEFDGGVVIGADARTTTGAYIANRVTDKL 253
           STGT+++A E++GGVV+G D+RT+ G++I +R T+K+
Sbjct: 21  STGTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKI 57


>Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical
           protein C47B2.4 protein.
          Length = 277

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 20/39 (51%), Positives = 29/39 (74%)
 Frame = +2

Query: 143 STGTSIMACEFDGGVVIGADARTTTGAYIANRVTDKLRK 259
           STGT+I+A  F GG+V+GAD+R T G  IA++  +K+ K
Sbjct: 44  STGTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKVHK 82



 Score = 36.7 bits (81), Expect = 0.008
 Identities = 17/65 (26%), Positives = 35/65 (53%)
 Frame = +1

Query: 256 KITDQIYCCRSGSGADTQAIADIVTYHLDFHKMGLGDPPLVETAAAIFRERCYNYRDSLV 435
           K+T+ IY C +G+ AD   +  +++ +L   ++  G    V TA    ++  +NY+  + 
Sbjct: 82  KLTESIYACGAGTAADLDQVTKMLSGNLRLLELNTGRKARVITALRQAKQHLFNYQGYIG 141

Query: 436 AGILV 450
           A +L+
Sbjct: 142 AYLLI 146


>Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical
           protein K05C4.1 protein.
          Length = 284

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = +2

Query: 179 GGVVIGADARTTTGAYIANRVTDKL 253
           GG+++  D+R ++G YI+++   K+
Sbjct: 81  GGIIVAVDSRASSGEYISSKSVMKI 105


>AF038613-2|AAB92049.1|  477|Caenorhabditis elegans Cytochrome p450
           family protein 25A5 protein.
          Length = 477

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = +1

Query: 337 LDFHKMGL--GDPPLV-ETAAAIFRERC 411
           LD  ++ L  GDPP++ ET   IFR RC
Sbjct: 440 LDTFELSLVPGDPPMIPETNGVIFRPRC 467


>Z35598-7|CAA84650.2|  325|Caenorhabditis elegans Hypothetical
           protein F10F2.3 protein.
          Length = 325

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 140 HSTGTSIMACEFDGGVVIGADARTTTGAYIANRV 241
           HS G  +M     GG +IG D   T G  +  +V
Sbjct: 159 HSVGVPLMRKVVKGGTLIGTDGNCTLGPPLGAKV 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,150,144
Number of Sequences: 27780
Number of extensions: 234016
Number of successful extensions: 501
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)