Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10618X
(469 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1) (P... 65 3e-11
At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2) (P... 48 4e-06
At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2) (P... 48 4e-06
At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1) id... 47 6e-06
At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1) id... 47 6e-06
At1g13060.1 68414.m01514 20S proteasome beta subunit E1 (PBE1) (... 38 0.003
At3g26340.1 68416.m03286 20S proteasome beta subunit E, putative... 32 0.22
At4g30110.1 68417.m04281 ATPase E1-E2 type family protein / halo... 29 2.1
>At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1)
(PRCD) identical to cDNA proteasome subunit prcd
GI:2511593
Length = 233
Score = 64.9 bits (151), Expect = 3e-11
Identities = 28/70 (40%), Positives = 42/70 (60%)
Frame = +1
Query: 256 KITDQIYCCRSGSGADTQAIADIVTYHLDFHKMGLGDPPLVETAAAIFRERCYNYRDSLV 435
++TD +Y CRSGS AD+Q ++D V Y L H + G P V+ +A + R YN ++ L
Sbjct: 48 QLTDNVYVCRSGSAADSQVVSDYVRYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQ 107
Query: 436 AGILVAVWGK 465
G++V W K
Sbjct: 108 TGLIVGGWDK 117
Score = 61.7 bits (143), Expect = 2e-10
Identities = 24/42 (57%), Positives = 36/42 (85%)
Frame = +2
Query: 128 MNAPHSTGTSIMACEFDGGVVIGADARTTTGAYIANRVTDKL 253
++APHS GT+I+ ++GGVV+GAD+RT+TG Y+ANR +DK+
Sbjct: 5 LDAPHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKI 46
>At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 47.6 bits (108), Expect = 4e-06
Identities = 19/60 (31%), Positives = 36/60 (60%)
Frame = +1
Query: 271 IYCCRSGSGADTQAIADIVTYHLDFHKMGLGDPPLVETAAAIFRERCYNYRDSLVAGILV 450
IYCC +G+ ADT+A+ D+V+ L H+ G V TA + ++ ++Y+ + A +++
Sbjct: 80 IYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQGHVSAALVL 139
Score = 36.7 bits (81), Expect = 0.008
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +2
Query: 146 TGTSIMACEFDGGVVIGADARTTTGAYIANRVTDKL 253
TGT+I+ F GV++GAD R T G +A++ +K+
Sbjct: 38 TGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKI 73
>At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 47.6 bits (108), Expect = 4e-06
Identities = 19/60 (31%), Positives = 36/60 (60%)
Frame = +1
Query: 271 IYCCRSGSGADTQAIADIVTYHLDFHKMGLGDPPLVETAAAIFRERCYNYRDSLVAGILV 450
IYCC +G+ ADT+A+ D+V+ L H+ G V TA + ++ ++Y+ + A +++
Sbjct: 80 IYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQGHVSAALVL 139
Score = 36.7 bits (81), Expect = 0.008
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +2
Query: 146 TGTSIMACEFDGGVVIGADARTTTGAYIANRVTDKL 253
TGT+I+ F GV++GAD R T G +A++ +K+
Sbjct: 38 TGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKI 73
>At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 273
Score = 47.2 bits (107), Expect = 6e-06
Identities = 19/60 (31%), Positives = 36/60 (60%)
Frame = +1
Query: 271 IYCCRSGSGADTQAIADIVTYHLDFHKMGLGDPPLVETAAAIFRERCYNYRDSLVAGILV 450
IYCC +G+ ADT+A+ D+V+ L H+ G V TA + ++ ++Y+ + A +++
Sbjct: 80 IYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQGHVSAALVL 139
Score = 36.7 bits (81), Expect = 0.008
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +2
Query: 146 TGTSIMACEFDGGVVIGADARTTTGAYIANRVTDKL 253
TGT+I+ F GV++GAD R T G +A++ +K+
Sbjct: 38 TGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKI 73
>At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 267
Score = 47.2 bits (107), Expect = 6e-06
Identities = 19/60 (31%), Positives = 36/60 (60%)
Frame = +1
Query: 271 IYCCRSGSGADTQAIADIVTYHLDFHKMGLGDPPLVETAAAIFRERCYNYRDSLVAGILV 450
IYCC +G+ ADT+A+ D+V+ L H+ G V TA + ++ ++Y+ + A +++
Sbjct: 80 IYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQGHVSAALVL 139
Score = 36.7 bits (81), Expect = 0.008
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +2
Query: 146 TGTSIMACEFDGGVVIGADARTTTGAYIANRVTDKL 253
TGT+I+ F GV++GAD R T G +A++ +K+
Sbjct: 38 TGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKI 73
>At1g13060.1 68414.m01514 20S proteasome beta subunit E1 (PBE1)
(PRCE) identical to GB:O23717; identical to cDNA
proteasome subunit prce GI:2511595
Length = 274
Score = 38.3 bits (85), Expect = 0.003
Identities = 15/38 (39%), Positives = 26/38 (68%)
Frame = +2
Query: 140 HSTGTSIMACEFDGGVVIGADARTTTGAYIANRVTDKL 253
H+ GT+ +A F GGV++ AD+R + G YI+++ K+
Sbjct: 54 HAKGTTTLAFIFKGGVMVAADSRASMGGYISSQSVKKI 91
>At3g26340.1 68416.m03286 20S proteasome beta subunit E, putative
very strong similarity to SP|O23717 Proteasome subunit
beta type 5 precursor (EC 3.4.25.1) (20S proteasome
subunit E) (Proteasome epsilon chain) {Arabidopsis
thaliana}
Length = 273
Score = 31.9 bits (69), Expect = 0.22
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 149 GTSIMACEFDGGVVIGADARTTTGAYIANRVTDKL 253
GT+ +A F GV++ AD+R + G YI+++ K+
Sbjct: 57 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKI 91
>At4g30110.1 68417.m04281 ATPase E1-E2 type family protein /
haloacid dehalogenase-like hydrolase family protein /
heavy-metal-associated domain-containing protein similar
to cadmium efflux pump protein from Geobacillus
stearothermophilus [GI:16753175], cadmium resistance
protein B from Staphylococcus aureus [GI:14020985]
Length = 951
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 357 PHLVEVQMICHNISYGLSVGTG 292
PH E+Q CH+ GL +GTG
Sbjct: 837 PHQHELQQSCHDKPSGLDIGTG 858
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,615,325
Number of Sequences: 28952
Number of extensions: 224029
Number of successful extensions: 504
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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