Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10611
         (340 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   1.8  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    26   1.8  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    25   2.4  
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|...    25   2.4  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    25   3.2  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    24   5.5  
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    24   7.3  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    23   9.6  

>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 265 IICELSLELLVRKHWWAKVPAIVKYSAVETISGCFYNKKDYSH 137
           I C+L  E L+  H     P   +   ++  S CFYN+K Y++
Sbjct: 641 IHCDLKPENLLLSH-----PLKARIKLIDFGSSCFYNEKVYTY 678


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 121 NIQSNNDYSLFCCKNTQISFRRPNISQWPVLLPTNA 228
           ++ S   YSL+C +     FRRP  S   +LL T A
Sbjct: 284 SLNSKISYSLYCNETLVSFFRRPAFSPDGLLLVTPA 319


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = -1

Query: 250 SLELLVRKHWWAKVPAIVKYSAVETISGCFYNKKDYSHYWIGCFSLYTMLPNKLSS*VND 71
           SL + V  HW A   +++ + A      CF +    S++++  ++L+T      S   ND
Sbjct: 75  SLSVCVALHWIAFSCSVMCHFAWSCALPCFVDSFFPSNFFLRTYALFTFSLQLWSG--ND 132

Query: 70  INIKHYY 50
           +   H Y
Sbjct: 133 LQGNHSY 139


>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 215 KSTGHCEIFGRRNDIW 168
           KS  + EIFGR N+IW
Sbjct: 313 KSLNNPEIFGRLNEIW 328


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -1

Query: 139 HYWIGCFSLYTMLPNKLSS 83
           + +IGCF ++T + N++SS
Sbjct: 358 YLYIGCFHMHTQVLNRMSS 376


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 88  LTC*GASYTKRNIQSNNDYSLFCCKNTQISFRRPNISQWPVLLPTNASLQVV 243
           LT  G  Y ++ + S    S FC +   +     N+ ++  L+ T   LQVV
Sbjct: 575 LTSYGRLYAEQRLLSTGVLSFFCTERFVLFTTTKNLLKFVHLVSTVDDLQVV 626


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 158 VKTPRYRFDGRIFHNGRYFCP 220
           +K PR RFDG      RYF P
Sbjct: 194 LKKPRSRFDGCYISVCRYFRP 214


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 62  DVDVINLRT*LVREHRIQ 115
           +VD+I L+  L +EHR+Q
Sbjct: 481 EVDIIFLKKSLFKEHRVQ 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,174,942
Number of Sequences: 5004
Number of extensions: 22228
Number of successful extensions: 56
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)