Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10611
         (340 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0264 - 18916879-18916920,18917871-18918563                       31   0.30 
07_03_1542 + 27577257-27577559,27577653-27577730,27577900-275779...    30   0.53 
09_06_0059 - 20584196-20584288,20584389-20585055,20585411-205857...    27   3.8  
01_06_0970 - 33478044-33478399,33478593-33478692,33479181-33480047     27   5.0  

>06_03_0264 - 18916879-18916920,18917871-18918563
          Length = 244

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -1

Query: 229 KHWWAKVPAIVKYSAVETISGC 164
           KHWW   PA V+YS +ETI  C
Sbjct: 224 KHWWT--PAEVRYSRLETIYRC 243


>07_03_1542 +
           27577257-27577559,27577653-27577730,27577900-27577999,
           27578677-27578819,27579242-27579478
          Length = 286

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 175 ISGCFYNKKDYSHYWIGC 122
           ++GC Y K+ YS YW GC
Sbjct: 126 LNGCVYIKEAYSVYWSGC 143


>09_06_0059 -
           20584196-20584288,20584389-20585055,20585411-20585732,
           20585862-20586000,20586261-20586322,20586371-20586434,
           20586674-20586826,20586952-20587082,20587175-20587336,
           20588060-20588264
          Length = 665

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 113 QRETSNPIMTIVFFVVKTPRYRFDGRIFHNG 205
           +RET+ P + +V F V      FDG+ F NG
Sbjct: 454 KRETNQPPIRVVPFPVPVGGLTFDGQPFWNG 484


>01_06_0970 - 33478044-33478399,33478593-33478692,33479181-33480047
          Length = 440

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 174 YLGVFTTKKTIVIIGLDVS-LCIRCSLT 94
           ++GV  + KT+ + G DV  L + CSLT
Sbjct: 271 FIGVLLSAKTLALFGSDVKFLVMTCSLT 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,905,214
Number of Sequences: 37544
Number of extensions: 121783
Number of successful extensions: 273
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)