Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10611
         (340 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20428| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.2  
SB_22442| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.9  
SB_17356| Best HMM Match : DUF590 (HMM E-Value=0)                      27   3.9  
SB_43583| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_41709| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.8  
SB_25191| Best HMM Match : zf-B_box (HMM E-Value=1.1)                  26   6.8  
SB_16703| Best HMM Match : RVT_1 (HMM E-Value=0.41)                    26   6.8  
SB_35874| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4)             26   9.0  

>SB_20428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -1

Query: 265 IICELSLELL-VRKHWWAKVPAIVKYSAVETISGCFYNKKDYSHYWIGCFSLYTMLPNKL 89
           ++C  S   + V K +W +    +KY  ++ I   F  K      W+G ++ + ++P+ L
Sbjct: 52  LLCAFSYACVTVLKEYWGRWGKWLKYQPLDHIRDYFGEKIGIYFAWLGQYTAWLIMPSFL 111


>SB_22442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -1

Query: 196 KYSAVETISGCFYNKKDYSHYWI--GCFSLYTMLPNKLS 86
           +YS V  + G F +++ YSH  I  G +S  TM+ ++ S
Sbjct: 65  RYSRVTMMKGRFSHRQSYSHVTIMKGRYSQVTMMKDRYS 103


>SB_17356| Best HMM Match : DUF590 (HMM E-Value=0)
          Length = 982

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = -1

Query: 238 LVRKHWWAKVPAIVKYSAVETISGCFYNKKDYSHYWIGCFSLYTMLPNKL 89
           +V K +W +    +KY  ++ I   F  K      W+G ++ + ++P+ L
Sbjct: 397 VVLKEYWGRWGKWLKYQPLDHIRDYFGEKIGIYFAWLGQYTAWLIMPSFL 446


>SB_43583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 266 HNLRIITRTTCKEALVGKSTGHCEIF 189
           H  RI+  ++  + L G S GHC IF
Sbjct: 6   HQTRILIDSSKAQFLCGTSCGHCAIF 31


>SB_41709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 460

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 178 TISGCFYNKKDYSHYWIGCFSLY 110
           T SG FY     SH W  C SL+
Sbjct: 162 TDSGFFYGYSKASHRWKDCISLF 184


>SB_25191| Best HMM Match : zf-B_box (HMM E-Value=1.1)
          Length = 282

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/15 (66%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
 Frame = +2

Query: 197 HNGRYFCPPMLP-YK 238
           H G+YFCPP  P YK
Sbjct: 230 HTGKYFCPPTDPAYK 244


>SB_16703| Best HMM Match : RVT_1 (HMM E-Value=0.41)
          Length = 523

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/15 (66%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
 Frame = +2

Query: 197 HNGRYFCPPMLP-YK 238
           H G+YFCPP  P YK
Sbjct: 230 HTGKYFCPPTDPAYK 244


>SB_35874| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4)
          Length = 494

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +2

Query: 95  VREHRIQRETSNPIMTIVFFVVKTPRYRFDGRIFHNG 205
           VR  RIQ     PI  ++      PR  FD    HNG
Sbjct: 339 VRSRRIQSNGCYPITPVLSPHKPLPRVVFDSAAVHNG 375


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,448,027
Number of Sequences: 59808
Number of extensions: 153489
Number of successful extensions: 328
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)