Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10611
         (340 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006627-9|AAK85464.1|  367|Caenorhabditis elegans Hypothetical ...    29   1.1  
AF040653-2|ABC48247.1|  343|Caenorhabditis elegans Hypothetical ...    27   3.4  
AF002198-6|AAF99938.1|  295|Caenorhabditis elegans Serpentine re...    27   4.5  
U23519-9|ABS19470.1|  203|Caenorhabditis elegans Hypothetical pr...    26   6.0  
AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ...    26   6.0  
AC006627-10|AAK85465.1|  499|Caenorhabditis elegans Hypothetical...    26   6.0  
AC006608-6|AAF39753.1|  308|Caenorhabditis elegans Steroid alpha...    26   6.0  
AF078785-7|AAC27086.2|  295|Caenorhabditis elegans Serpentine re...    26   7.9  

>AC006627-9|AAK85464.1|  367|Caenorhabditis elegans Hypothetical
           protein E01A2.7 protein.
          Length = 367

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -1

Query: 223 WWAKVPAIVKYSAVETISGC--FYNKKDYSHYWIGC 122
           W  K   I K S +ET++GC  FY      H W GC
Sbjct: 247 WNQKDGEIQKISEIETLTGCDNFY-VDTQDHLWAGC 281


>AF040653-2|ABC48247.1|  343|Caenorhabditis elegans Hypothetical
           protein K05F6.11 protein.
          Length = 343

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 223 WWAKVPAIVKYSAVETISGCF-YNKKDYSHYWIGC 122
           W  K   I K S +ET++GC+ +   +  + W GC
Sbjct: 224 WDQKKITIKKISEIETLTGCYNFFIDNEDNLWSGC 258


>AF002198-6|AAF99938.1|  295|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 1 protein.
          Length = 295

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +2

Query: 38  T*CLVVVFDVDVINLRT*LVREHRIQRETSNPIMTIVFFVVKTPRYR--FDGRIFHNGRY 211
           T C+V  F  D ++ +   +       +T+  + TIV   +   R    +   +FHN R+
Sbjct: 68  TFCIVYSFFTDELHAQQVFILYVGFPLQTAGAMRTIVAVTMSIERVLAIYTPIMFHNYRH 127

Query: 212 FCPPML 229
            CP +L
Sbjct: 128 LCPSIL 133


>U23519-9|ABS19470.1|  203|Caenorhabditis elegans Hypothetical
           protein F26G1.11 protein.
          Length = 203

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -1

Query: 250 SLELLVRKHWWAKVPAIVKYSAVETISGCFYNKKDYSHYWIGCFSLYTML 101
           SLE + R+H+W   P  +       +S    NK  ++H ++   SL+  +
Sbjct: 157 SLETIFRRHYWRARPVKIN----RKVSSSIQNKCYFTHIFLLLVSLFNCI 202


>AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical
            protein R155.2 protein.
          Length = 1308

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = +2

Query: 92   LVREHRIQRETSNPIMTIVFFVVKTPRYRFDGRIFHNGRYFCP 220
            LV++H +    +NP++     ++K  + +F+    H     CP
Sbjct: 961  LVKKHEMDLRVANPLIEKTRVILKGYKKQFNDNFLHANYVTCP 1003


>AC006627-10|AAK85465.1|  499|Caenorhabditis elegans Hypothetical
           protein E01A2.8 protein.
          Length = 499

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -1

Query: 223 WWAKVPAIVKYSAVETISGC---FYNKKDYSHYWIGC 122
           W  K   I K S +ET++GC   F + +D  + W GC
Sbjct: 380 WDQKKITIKKISEIETLTGCDNFFIDNED--NLWSGC 414


>AC006608-6|AAF39753.1|  308|Caenorhabditis elegans Steroid alpha
           reductase familyprotein 1 protein.
          Length = 308

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 77  NLRT*LVREHRIQRETSNPIMTIVFFVVKTPRYRFD 184
           NLR    RE RI +   NP ++++F  V  P Y ++
Sbjct: 217 NLRPAGTRERRIPKPDGNP-LSLLFNYVSCPNYTYE 251


>AF078785-7|AAC27086.2|  295|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 2 protein.
          Length = 295

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +2

Query: 38  T*CLVVVFDVDVINLRT*LVREHRIQRETSNPIMTIVFFVVKTPRYR--FDGRIFHNGRY 211
           T C+V  F  D ++ +   +       +T+  + TIV   +   R    +   +FHN R+
Sbjct: 68  TFCIVYSFFTDELHAQQVFILYVGFPLQTAGAMRTIVAVTMSIERVLAIYTPIMFHNYRH 127

Query: 212 FCPPML 229
            CP ++
Sbjct: 128 LCPSII 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,333,361
Number of Sequences: 27780
Number of extensions: 120252
Number of successful extensions: 312
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)