Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10611
         (340 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    21   5.4  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   5.4  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   5.4  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   5.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          20   7.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   7.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   7.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   9.4  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    20   9.4  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           20   9.4  

>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 221 VGKSTGHCEIFG 186
           +GK+ GHCE  G
Sbjct: 67  LGKAGGHCEKVG 78


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 121 NIQSNNDYSLFCCKNTQISFRRPNISQWPVLLP 219
           N  +NN   L+C    ++ +    I Q P+ +P
Sbjct: 90  NYNNNNYKKLYCNNYKKLYYNINYIEQIPIPVP 122


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 121 NIQSNNDYSLFCCKNTQISFRRPNISQWPVLLP 219
           N  +NN   L+C    ++ +    I Q P+ +P
Sbjct: 90  NYNNNNYKKLYCNNYKKLYYNINYIEQIPIPVP 122


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 121 NIQSNNDYSLFCCKNTQISFRRPNISQWPVLLP 219
           N  +NN   L+C    ++ +    I Q P+ +P
Sbjct: 90  NYNNNNYKKLYCNNYRKLYYNINYIEQIPIPVP 122


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 103 LPNKLSS*VNDINIKHYY 50
           L NKL+  + DI +  YY
Sbjct: 216 LENKLNYFIEDIGLNTYY 233


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +2

Query: 155 VVKTPRYRFDGRIFHNGR 208
           V++ P+Y+F+   + +GR
Sbjct: 358 VMRRPQYKFETNRYSSGR 375


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +2

Query: 155 VVKTPRYRFDGRIFHNGR 208
           V++ P+Y+F+   + +GR
Sbjct: 358 VMRRPQYKFETNRYSSGR 375


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 162 FTTKKTIVIIGLDVSLCI 109
           +T + T V+IG    LCI
Sbjct: 388 YTWRHTSVLIGWSAFLCI 405


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 221 VGKSTGHCE 195
           +GK+ GHCE
Sbjct: 67  LGKAGGHCE 75


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 221 VGKSTGHCE 195
           +GK+ GHCE
Sbjct: 42  LGKAGGHCE 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,874
Number of Sequences: 438
Number of extensions: 1505
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)