Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10611
         (340 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18830.1 68414.m02345 transducin family protein / WD-40 repea...    26   5.6  
At1g32450.1 68414.m04005 proton-dependent oligopeptide transport...    26   7.4  
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica...    25   9.7  
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica...    25   9.7  
At3g61770.1 68416.m06929 expressed protein contains Pfam domain,...    25   9.7  
At3g03570.1 68416.m00360 expressed protein similar to hypothetic...    25   9.7  
At1g73080.1 68414.m08450 leucine-rich repeat transmembrane prote...    25   9.7  

>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
           family protein similar to Sec31p (GI:13928450)  {Oryza
           sativa}
          Length = 969

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 226 HWWAKVPAIVKYSAVETISGCFYNKKDYSHY 134
           HW+ K+P ++  S+V+   G  YN +  S Y
Sbjct: 302 HWYPKMPGVISASSVDGKIG-IYNLEGCSSY 331


>At1g32450.1 68414.m04005 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 614

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 122 TSNPIMTIVFFVVKTPRYRF 181
           T + I+ ++ F+V TPRYR+
Sbjct: 234 TGSAIIGLILFLVGTPRYRY 253


>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
           protein contains similarity to ec31p [Oryza sativa]
           gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
           WD domain, G-beta repeat
          Length = 1102

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 226 HWWAKVPAIVKYSAVETISGCFYNKKDYSHYWI 128
           HW+ K+P ++  S+ +   G  YN +  S Y +
Sbjct: 313 HWYPKIPGVISASSFDGKIG-IYNIEGCSRYGV 344


>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
           protein contains similarity to ec31p [Oryza sativa]
           gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
           WD domain, G-beta repeat
          Length = 1104

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 226 HWWAKVPAIVKYSAVETISGCFYNKKDYSHYWI 128
           HW+ K+P ++  S+ +   G  YN +  S Y +
Sbjct: 313 HWYPKIPGVISASSFDGKIG-IYNIEGCSRYGV 344


>At3g61770.1 68416.m06929 expressed protein contains Pfam domain,
           PF02681: Uncharacterized BCR, COG1963
          Length = 284

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 130 SNNDYSLFCCKNT 168
           SNN  SLFCCK++
Sbjct: 38  SNNTLSLFCCKSS 50


>At3g03570.1 68416.m00360 expressed protein similar to hypothetical
           protein GB:CAB38918 [Arabidopsis thaliana]
          Length = 607

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 223 WWAKV-PAIVKYSAVETISGCFYNKKDYSHYWIGCFSLYTML 101
           +W+ V  A  K+S +  +   FY +  Y +Y+   F +YT L
Sbjct: 17  YWSLVNKADKKFSKIRDLP--FYERSRYENYFFKVFKVYTQL 56


>At1g73080.1 68414.m08450 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor protein kinase
           GI:1389566 from [Arabidopsis thaliana]
          Length = 1123

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 130 SNNDYS-LFCCKNTQISFRRPNISQWPVLLPTNASLQVVLVIIRKL 264
           SNN  S L  CK+ Q   R+  +S W ++L    S  +VLV++  L
Sbjct: 744 SNNSRSALKYCKD-QSKSRKSGLSTWQIVLIAVLSSLLVLVVVLAL 788


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,847,938
Number of Sequences: 28952
Number of extensions: 107764
Number of successful extensions: 229
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)