Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10610
         (435 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6BM50 Cluster: DNA-directed RNA polymerase subunit bet...    35   0.65 
UniRef50_A0UF40 Cluster: Putative uncharacterized protein precur...    34   1.5  
UniRef50_Q01B45 Cluster: PHD finger protein BR140/LIN-49; n=2; O...    32   4.6  
UniRef50_Q0V5W2 Cluster: Putative uncharacterized protein; n=1; ...    31   8.0  

>UniRef50_A6BM50 Cluster: DNA-directed RNA polymerase subunit beta;
           n=4; Embryophyta|Rep: DNA-directed RNA polymerase
           subunit beta - Gnetum parvifolium
          Length = 1108

 Score = 35.1 bits (77), Expect = 0.65
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +1

Query: 100 FEGWGSRCTVKLRHLNSCIKVGAFTLYMSMGS 195
           FEGWG  C  KL+H  S  K   FT Y  +GS
Sbjct: 201 FEGWGLICNEKLKHKLSRKKGAIFTFYEELGS 232


>UniRef50_A0UF40 Cluster: Putative uncharacterized protein
           precursor; n=1; Burkholderia multivorans ATCC 17616|Rep:
           Putative uncharacterized protein precursor -
           Burkholderia multivorans ATCC 17616
          Length = 884

 Score = 33.9 bits (74), Expect = 1.5
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
 Frame = -2

Query: 224 HRSPSVQ*LPEPIDIYNVNAPTLIHEFKCLSLTVQRL---PHPS-----NRNALLLHGRN 69
           H  PS+    EP+ +  + AP LI EF+C S  +  +   P P+     +R+A +   R 
Sbjct: 640 HEKPSMNRSCEPVRVIGMRAPNLIAEFRCSSYRIAYVVDRPVPASIRDEDRHAAIARARR 699

Query: 68  RHLESGNNLTRGGPYARLPI 9
           R +     L  G    R P+
Sbjct: 700 RVVAGDERLRIGAADGREPM 719


>UniRef50_Q01B45 Cluster: PHD finger protein BR140/LIN-49; n=2;
           Ostreococcus|Rep: PHD finger protein BR140/LIN-49 -
           Ostreococcus tauri
          Length = 1206

 Score = 32.3 bits (70), Expect = 4.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 195 RAHRHIQRKCPHLDTRVQMSQFNSTTAAPPFKPKRI 88
           R H  +Q K   LDT++ M Q+  T    P KP +I
Sbjct: 200 RKHAKLQAKADALDTQLHMVQYGKTPDGKPVKPNQI 235


>UniRef50_Q0V5W2 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 1141

 Score = 31.5 bits (68), Expect = 8.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 137 LSLTVQRLPHPSNRNALLLHGRNRHLESGNNLTRGGPYAR 18
           L+ T   L H  N+N  L+  R+R L + + +   GPY R
Sbjct: 628 LNSTATMLHHDENKNIRLIDSRSRSLSASSGVLLNGPYDR 667


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 401,240,559
Number of Sequences: 1657284
Number of extensions: 7136300
Number of successful extensions: 14014
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14011
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21496989549
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)