Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10610
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   2.9  
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    25   3.8  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    25   5.0  
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    25   6.7  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    24   8.8  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    24   8.8  

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 270 HTVASLFYCLAR-WTSSSLT*CSVITRAHRH 181
           HTVA + YCL     SS L   +V   +HRH
Sbjct: 242 HTVADMSYCLKNSGISSGLATLTVDNISHRH 272


>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 173 RCICLWALVITEH*VSDELVHLAKQ*N 253
           R  C W LV+TEH VS E   L +  N
Sbjct: 285 RVYCSWELVLTEH-VSSEYAFLLEYFN 310


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +1

Query: 58  SKCLFLP*SSNAFRFEGWGSRCTVKLRHLNSCIKV 162
           ++C+FL  +   F+   W  +  +    +N+CI V
Sbjct: 510 NRCIFLARNFRIFKCMDWAEKVRLLWEFVNTCINV 544


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 332 AVRERVVISTDILSFIENSLIKPSYVSM*K 421
           A+RE V   TD+LS   +SL K S +++ K
Sbjct: 129 AIREAVKFMTDVLSCSVDSLGKESLINVAK 158


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 417 HIETYEGFINEFSIKLKISVLMTT 346
           +I  YE +++  S KLK ++L+TT
Sbjct: 479 NIREYEFYLSTNSRKLKFNILLTT 502


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 337 YCCEAIVRFGSKNPQTS 287
           YCC A+ RF  K P TS
Sbjct: 434 YCCIALKRFPWKVPHTS 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,663,865
Number of Sequences: 5004
Number of extensions: 29313
Number of successful extensions: 67
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)