Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10610
         (435 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,340...    28   2.9  
11_06_0312 - 22286883-22287007,22288214-22288244                       27   6.6  

>12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,
            3404071-3404562,3404718-3404821,3404913-3404994,
            3405085-3405441,3405532-3406089,3406376-3406479,
            3406575-3406650,3406764-3406898,3407192-3407494,
            3407581-3408345,3409459-3412591,3412763-3412882
          Length = 2445

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +2

Query: 323  CFAAVRERV-VISTDILSFIENSLIKPSYVSM 415
            C  + R R+  IST +LSF  +S +KPS+++M
Sbjct: 2353 CQTSGRRRIDEISTKLLSFKISSTVKPSHIAM 2384


>11_06_0312 - 22286883-22287007,22288214-22288244
          Length = 51

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 361 GTNDHPFSYCCEAIVRFGSKNPQTS 287
           G  +  FS CC +IVRFG  NP+ S
Sbjct: 11  GLENDAFSGCCISIVRFG--NPEKS 33


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,069,634
Number of Sequences: 37544
Number of extensions: 209914
Number of successful extensions: 398
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)