Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10610
         (435 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54455| Best HMM Match : Peptidase_C39 (HMM E-Value=7.4)             31   0.54 
SB_34105| Best HMM Match : Extensin_2 (HMM E-Value=4.8)                28   2.9  
SB_4064| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.9  
SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               27   6.7  
SB_17172| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_54455| Best HMM Match : Peptidase_C39 (HMM E-Value=7.4)
          Length = 215

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 212 SVQ*LPEPIDIYNVNAPTLIHEFKCLSLTVQRLPHPSNRNALLLHGRNR 66
           ++Q L +P D+  +   TL   F  ++LT+Q L  P N   L +   N+
Sbjct: 54  AIQTLSKPFDLATLAIQTLSKPFDLVTLTIQTLSKPFNLETLTIQTLNK 102



 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 212 SVQ*LPEPIDIYNVNAPTLIHEFKCLSLTVQRLPHPSNRNALLLHGRNR 66
           ++Q L +P D+  +   TL   F+ ++LT+Q L  P +   L +   N+
Sbjct: 96  TIQTLNKPFDLVTLTIQTLSKPFELVTLTIQTLSKPFDLVTLTIQTLNK 144



 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 212 SVQ*LPEPIDIYNVNAPTLIHEFKCLSLTVQRLPHP 105
           ++Q L +P D+  +   TL   F  ++LT+Q L  P
Sbjct: 152 TIQTLSKPFDLVTLTIQTLSKPFDLVTLTIQALSKP 187



 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 212 SVQ*LPEPIDIYNVNAPTLIHEFKCLSLTVQRLPHP 105
           ++Q L +P D+  +   TL   F  ++LT+Q L  P
Sbjct: 124 TIQTLSKPFDLVTLTIQTLNKPFDLVTLTIQTLSKP 159



 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 212 SVQ*LPEPIDIYNVNAPTLIHEFKCLSLTVQRLPHP 105
           ++Q L +P D+  +   TL   F  ++LT+Q L  P
Sbjct: 138 TIQTLNKPFDLVTLTIQTLSKPFDLVTLTIQTLSKP 173


>SB_34105| Best HMM Match : Extensin_2 (HMM E-Value=4.8)
          Length = 623

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 176 NVNAPTLIHEFKCLSLTVQRLPH 108
           ++ AP L+H++ C S+TV  L H
Sbjct: 480 SITAPVLLHQYYCTSITVPVLLH 502



 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 176 NVNAPTLIHEFKCLSLTVQRLPH 108
           +V AP L+H++ C S+T   L H
Sbjct: 26  SVTAPVLLHQYYCTSITAPVLLH 48



 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 176 NVNAPTLIHEFKCLSLTVQRLPHPSNRNALL 84
           ++  P L+H++ C S+TV  L H      LL
Sbjct: 399 SITVPVLLHQYYCTSITVPVLLHHITAPVLL 429



 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 176 NVNAPTLIHEFKCLSLTVQRLPH 108
           ++ AP L+H++ C S+T   L H
Sbjct: 110 SITAPVLLHQYYCTSITAPVLLH 132



 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 176 NVNAPTLIHEFKCLSLTVQRLPH 108
           ++ AP L+H++ C S+T   L H
Sbjct: 157 SITAPVLLHQYYCTSITAPVLLH 179



 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 176 NVNAPTLIHEFKCLSLTVQRLPH 108
           ++  P L+H++ C S+TV  L H
Sbjct: 494 SITVPVLLHQYYCTSITVPVLLH 516



 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 176 NVNAPTLIHEFKCLSLTVQRLPH 108
           ++ AP L+H++ C S+T   L H
Sbjct: 527 SITAPVLLHQYYCTSITAPVLLH 549



 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 176 NVNAPTLIHEFKCLSLTVQRLPH 108
           ++ AP L+H++ C S+T   L H
Sbjct: 541 SITAPVLLHQYYCTSITAPVLLH 563



 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 176 NVNAPTLIHEFKCLSLTVQRLPH 108
           ++ AP L+H++ C S+T   L H
Sbjct: 555 SITAPVLLHQYYCTSITAPVLLH 577



 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 176 NVNAPTLIHEFKCLSLTVQRLPH 108
           ++ AP L+H++ C S+T   L H
Sbjct: 569 SITAPVLLHQYYCTSITAPVLLH 591



 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 176 NVNAPTLIHEFKCLSLTVQRLPH 108
           ++ AP L+H++ C S+T   L H
Sbjct: 583 SITAPVLLHQYYCTSITAPVLLH 605


>SB_4064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 176 NVNAPTLIHEFKCLSLTVQRLPH 108
           ++ AP L+H++ C S+TV  L H
Sbjct: 28  SITAPVLLHQYYCTSITVPVLLH 50


>SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1215

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 22  AYGPPLVKLLPDSKCLFLP 78
           A+G P++  LPDS+C+ LP
Sbjct: 836 AFGYPVLYSLPDSRCVLLP 854


>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4247

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 127 QYNGCPTL--QTETHYCFTAEIGTWSLVTI*QEEGRTL 20
           Q+NG PT    T T +CF A +   S+  +    GRTL
Sbjct: 15  QFNGRPTSISYTPTSHCFVATLEDGSVEVLDVSSGRTL 52


>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 125 VQRLPHPSNRNALLLHG 75
           VQR P P+ RN++ LHG
Sbjct: 30  VQRRPEPTPRNSIFLHG 46


>SB_17172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = -1

Query: 204 VITRAHRHIQRKCPHLDTRVQMSQFNSTTAAPPFKPKRITASRQK*ALGVW*QFNK 37
           + T     I   C HLD  V  S  NS    P F+  R+T   Q   +  W Q +K
Sbjct: 57  IFTPDEHDIWIMCKHLDHHVAPSMSNSLPPVPYFQWHRLTI--QPLTMNDWPQLSK 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,757,330
Number of Sequences: 59808
Number of extensions: 232725
Number of successful extensions: 504
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)