Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10610
         (435 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   4.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   4.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.0  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 267 CDTALRHEVCGFFEPN 314
           C   L HEVCG F  N
Sbjct: 117 CMLELGHEVCGRFYGN 132


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +2

Query: 278 LEARGLRILRTEPHNCFAAVRERVVISTDILSFIENSLIKPSYVS 412
           L A G +I+RT     + +    + ++  +   I NS+I   Y +
Sbjct: 140 LYALGAKIIRTPTEASWHSPEAHISVAQKLQKEIPNSIILDQYTN 184


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 283  GTRSADSSNRTAQLLRSSKRKGGH 354
            G+R  DS+  + +L RSS+ +  H
Sbjct: 1407 GSRDEDSTRDSTKLDRSSREREVH 1430


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,391
Number of Sequences: 438
Number of extensions: 2170
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)