Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10610
         (435 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24530.1 68414.m03088 transducin family protein / WD-40 repea...    29   1.4  
At1g04360.1 68414.m00426 zinc finger (C3HC4-type RING finger) fa...    27   5.5  
At3g46980.2 68416.m05102 transporter-related low similarity to b...    26   9.5  
At3g46980.1 68416.m05101 transporter-related low similarity to b...    26   9.5  

>At1g24530.1 68414.m03088 transducin family protein / WD-40 repeat
           family protein similar to Vegetatible incompatibility
           protein HET-E-1 (SP:Q00808) {Podospora anserina};
           contains 7 WD-40 repeats (PF00400)
          Length = 418

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 168 CPHLDTRVQMSQFNSTTAAPPFKPKRITASRQK*ALGVW 52
           C HLDT      F+ T  +  F  ++I  + Q   +GVW
Sbjct: 112 CAHLDTFNGQDPFSGTVKSVGFSGEKIFTAHQDGKIGVW 150


>At1g04360.1 68414.m00426 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 381

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = -2

Query: 188 IDIY---NVNAPTLIHEFKC-LSLTVQRLPHPSNRNALLLHGRNRHLESGNNLTRGG 30
           IDI+   N N P       C  S T+  +  PS+      H RNR+LE G  L  GG
Sbjct: 162 IDIWLQGNANCPLCRTSVSCEASFTLDLISAPSSPRENSPHSRNRNLEPG--LVLGG 216


>At3g46980.2 68416.m05102 transporter-related low similarity to
           brain specific Na+-dependent inorganic phosphate
           cotransporter from [Rattus norvegicus] GI:507415, [Homo
           sapiens] GI:7328925, vesicular glutamate transporter 3
           from [Rattus norvegicus] GI:21685382; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 469

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 140 CLSLTVQRLPHPSNRNALLLHGRNRHLESGNNLTRGGPY 24
           C SL++Q      NRNAL +HG    L S     R  P+
Sbjct: 2   CYSLSIQSSIDFHNRNALKIHGDRAILTSNLPTLRRIPF 40


>At3g46980.1 68416.m05101 transporter-related low similarity to
           brain specific Na+-dependent inorganic phosphate
           cotransporter from [Rattus norvegicus] GI:507415, [Homo
           sapiens] GI:7328925, vesicular glutamate transporter 3
           from [Rattus norvegicus] GI:21685382; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 533

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 140 CLSLTVQRLPHPSNRNALLLHGRNRHLESGNNLTRGGPY 24
           C SL++Q      NRNAL +HG    L S     R  P+
Sbjct: 2   CYSLSIQSSIDFHNRNALKIHGDRAILTSNLPTLRRIPF 40


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,834,046
Number of Sequences: 28952
Number of extensions: 163459
Number of successful extensions: 335
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)