Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10608
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...   103   2e-23
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...   101   7e-23
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    30   0.27 
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    28   1.5  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    27   3.4  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    27   3.4  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    26   5.9  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    26   5.9  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    25   7.8  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    25   7.8  
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   7.8  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    25   7.8  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    25   7.8  

>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score =  103 bits (248), Expect = 2e-23
 Identities = 46/76 (60%), Positives = 56/76 (73%)
 Frame = +1

Query: 34  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 213
           SKVS   +   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP 
Sbjct: 2   SKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61

Query: 214 MQVCVLGDQQHCDELK 261
           M +C+LGD    D  K
Sbjct: 62  MSICILGDAHDLDRAK 77



 Score = 86.2 bits (204), Expect = 4e-18
 Identities = 40/58 (68%), Positives = 48/58 (82%)
 Frame = +2

Query: 503 EEVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 676
           ++VLCL VAVGHVDM  ++LA N+ L+INFLVSLLKK WQN+ SL +KSTMG P RLY
Sbjct: 159 KKVLCLGVAVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNIGSLVIKSTMGKPYRLY 216



 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 35/49 (71%), Positives = 40/49 (81%)
 Frame = +3

Query: 363 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 509
           SE LIKQIPRLLGPGL+KAGKFP  +SH + +  KI EVK TIKFQ+KK
Sbjct: 112 SEVLIKQIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKK 160


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score =  101 bits (243), Expect = 7e-23
 Identities = 46/76 (60%), Positives = 57/76 (75%)
 Frame = +1

Query: 34  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 213
           SKVS  ++   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP 
Sbjct: 2   SKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61

Query: 214 MQVCVLGDQQHCDELK 261
           M +C+LGD    D  K
Sbjct: 62  MAICILGDAHDLDRAK 77



 Score = 83.4 bits (197), Expect = 3e-17
 Identities = 37/58 (63%), Positives = 48/58 (82%)
 Frame = +2

Query: 503 EEVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 676
           ++VLCL VAVGHV+M+ ++L  N+ L++NFLVSLLKK WQN+ SL +KSTMG P RLY
Sbjct: 159 KKVLCLGVAVGHVEMSEEQLIANIMLAVNFLVSLLKKGWQNIGSLVVKSTMGKPHRLY 216



 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 35/49 (71%), Positives = 40/49 (81%)
 Frame = +3

Query: 363 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 509
           SE LIKQIPRLLGPGL+KAGKFP  +SH + +  KI EVK TIKFQ+KK
Sbjct: 112 SEVLIKQIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKK 160


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +1

Query: 16   LTNKMSSKVSRDTLYE---CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 180
            +T+K++  V ++  Y    C N +++SS   K NF +TV +     +YD P+ D  + G
Sbjct: 920  VTSKLNDLVIKEFTYPSSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978



 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = +2

Query: 518  LSVAVGHVDMTPDEL----AQNVHLSINFLVSLLKKHW 619
            LS+A+G+++  P  L      N H+S+  L  L+K H+
Sbjct: 2706 LSMAIGNINDAPVRLNALLMDNAHVSLRRLFELVKNHY 2743


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 524 VAVGHVDMTPDELAQNVHLSINFLVS-LLKKHWQNVRSLHMKST 652
           +  GHV  T  ELA+NV   + F+   ++    + + S+H+K++
Sbjct: 201 IKCGHVSNTSTELAENVESILQFVSKHIVPDGAKGIASIHLKTS 244


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = -2

Query: 320 LFVLIQFFQSLSIHTWHIQGFSSSQCCWSPRTQTCIFGRGMYFSFTV 180
           L V +   Q +++  W +   +  Q  ++   QT     G + SFT+
Sbjct: 159 LLVFVCATQDIAVDGWSLNMLNPEQLSYASTAQTVGLNTGFFLSFTI 205


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 544 HDS**ACSECASFHQLPCVTAQETLAEC 627
           H S  + S   ++HQL CV  Q+ L+EC
Sbjct: 52  HPSINSLSSFQTYHQLLCVLEQKHLSEC 79


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/40 (20%), Positives = 22/40 (55%)
 Frame = +3

Query: 513 CVFL*QLAMWT*LLMSLLRMCIFPSTSLCHCSRNTGRMSD 632
           C FL    ++  + + +  +C+F  T++ +  +N  R+++
Sbjct: 37  CTFLLSTILYLGIAVIMSHLCVFDDTAMLYLRQNRSRLAE 76


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 479 DFINLLRHGLLVGEKTREFTSFVQTGTQQTGNLLDQ 372
           D   L RH  L   + + F +  Q GT+   NL DQ
Sbjct: 424 DLFRLFRHSNLSTSREQIFQNLEQLGTRVIKNLTDQ 459


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 557 HQESCPHGQLLQKDTTLLHLELNGSLD 477
           H E    G+      T+LH +LNGS D
Sbjct: 258 HDEELKQGKSTSPSDTVLHPDLNGSPD 284


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 536 GQLLQKDTTLLHLEL-NGSLDFINLLRHGLLVGEKTREFTSFVQ 408
           G +L    +LL L L + ++ FIN + H LL    + ++TS+ Q
Sbjct: 176 GSILLLRVSLLQLYLISWTIHFINFVFHSLLAVFFSSKYTSYAQ 219


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 25  KMSSKVSRDTLYECVNAVLQSSKDKKRNFLETV 123
           K   K   DT+ E   A LQSS DK  NF +T+
Sbjct: 215 KRPDKSPFDTMTE---ATLQSSSDKSENFTKTL 244


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +1

Query: 67  VNAVLQSSKDKKRNFLETV 123
           +NA+L+ SK+KK N +E++
Sbjct: 370 INALLERSKEKKANVIESL 388


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 326 DKLFVLIQFFQSLSIHTWHIQGFSSSQCCWSPRTQTCIFG 207
           DK  +L   F    +  +   GFS S CCW P   + I G
Sbjct: 276 DKSVILWDAFTGEKLRDYK-HGFSVSCCCWLPDGLSFITG 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,916
Number of Sequences: 5004
Number of extensions: 61299
Number of successful extensions: 187
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)