Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10608
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 110 1e-24
02_02_0678 + 12868735-12868739,12869576-12869795,12870280-128704... 109 3e-24
08_02_1568 + 27922338-27922342,27922839-27923058,27923369-279235... 107 6e-24
08_02_1573 + 27956351-27956409,27956411-27956630,27957000-279571... 107 1e-23
05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405... 43 3e-04
04_04_0401 - 24946801-24947562 42 5e-04
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 33 0.16
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 32 0.37
02_05_1241 - 35189111-35189389,35189604-35189711,35189982-351907... 30 2.0
09_06_0364 + 22554082-22554225,22554306-22554520,22554671-225547... 29 4.6
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020... 29 4.6
03_02_0221 + 6533643-6533687,6533860-6533955,6535323-6535682,653... 28 8.0
01_06_0026 + 25738960-25739075,25740385-25740733,25740825-25741511 28 8.0
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 110 bits (264), Expect = 1e-24
Identities = 47/74 (63%), Positives = 61/74 (82%)
Frame = +1
Query: 34 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 213
SK+ D L E ++ + S++K+R F+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSDALREAISQITSESREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 214 MQVCVLGDQQHCDE 255
M+VC+LGD QH +E
Sbjct: 62 MKVCMLGDAQHVEE 75
Score = 74.1 bits (174), Expect = 9e-14
Identities = 33/58 (56%), Positives = 46/58 (79%)
Frame = +2
Query: 503 EEVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 676
++VLC+ VAVG+ M ++ QNV +S+NFLVSLLKK+WQNVR L++KSTMG R++
Sbjct: 181 KKVLCMGVAVGNCAMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVIRVF 238
Score = 60.9 bits (141), Expect = 9e-10
Identities = 35/71 (49%), Positives = 44/71 (61%), Gaps = 22/71 (30%)
Frame = +3
Query: 363 SESLIKQIPRLLGPGLNKAGK----------------------FPGLLSHQESMTQKIDE 476
SE++IKQIPRLLGPGLNKAGK FP L++HQES+ K++E
Sbjct: 112 SEAIIKQIPRLLGPGLNKAGKILLVYGRSILKSSYIIVSKRGKFPTLVTHQESLESKVNE 171
Query: 477 VKGTIKFQMKK 509
K T+KFQ+KK
Sbjct: 172 TKATVKFQLKK 182
>02_02_0678 +
12868735-12868739,12869576-12869795,12870280-12870430,
12870853-12871058,12871166-12871219
Length = 211
Score = 109 bits (261), Expect = 3e-24
Identities = 46/74 (62%), Positives = 61/74 (82%)
Frame = +1
Query: 34 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 213
SK+ D L E ++ + S++K+R F+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSDALREAISQIANDSREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 214 MQVCVLGDQQHCDE 255
++VC+LGD QH +E
Sbjct: 62 LKVCMLGDAQHVEE 75
Score = 74.9 bits (176), Expect = 5e-14
Identities = 33/58 (56%), Positives = 46/58 (79%)
Frame = +2
Query: 503 EEVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 676
++VLC+ VAVG+ M ++ QNV +S+NFLVSLLKK+WQNVR L++KSTMG R++
Sbjct: 154 KKVLCMGVAVGNCAMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVYRVF 211
Score = 64.5 bits (150), Expect = 8e-11
Identities = 30/49 (61%), Positives = 39/49 (79%)
Frame = +3
Query: 363 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 509
SE++IKQIPRLLGPG KFP L++HQES+ K++E K T+KFQ+KK
Sbjct: 112 SEAIIKQIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKK 155
>08_02_1568 +
27922338-27922342,27922839-27923058,27923369-27923519,
27923874-27924079,27924211-27924264
Length = 211
Score = 107 bits (258), Expect = 6e-24
Identities = 48/74 (64%), Positives = 59/74 (79%)
Frame = +1
Query: 34 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 213
SK+ + L E ++ V+ K+K R F ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQTEALKEAISQVVADCKEKNRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 214 MQVCVLGDQQHCDE 255
M+VC+LGD QH +E
Sbjct: 62 MKVCMLGDAQHVEE 75
Score = 79.8 bits (188), Expect = 2e-15
Identities = 33/58 (56%), Positives = 48/58 (82%)
Frame = +2
Query: 503 EEVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 676
++VLC+ VAVG++ M ++ QN+ +S+NFLVSLLKK+WQNVR L++KSTMG P R++
Sbjct: 154 KKVLCMGVAVGNLSMEEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYIKSTMGKPYRVF 211
Score = 64.5 bits (150), Expect = 8e-11
Identities = 30/49 (61%), Positives = 39/49 (79%)
Frame = +3
Query: 363 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 509
SE++IKQIPRLLGPG KFP L++HQES+ K++E K T+KFQ+KK
Sbjct: 112 SEAIIKQIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKK 155
>08_02_1573 +
27956351-27956409,27956411-27956630,27957000-27957150,
27957602-27957807,27957967-27958020
Length = 229
Score = 107 bits (256), Expect = 1e-23
Identities = 48/73 (65%), Positives = 59/73 (80%)
Frame = +1
Query: 37 KVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM 216
K+ + L E ++ V+ SK+K R F ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPKM
Sbjct: 21 KLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKM 80
Query: 217 QVCVLGDQQHCDE 255
+VC+LGD QH +E
Sbjct: 81 KVCMLGDAQHVEE 93
Score = 79.0 bits (186), Expect = 3e-15
Identities = 33/58 (56%), Positives = 48/58 (82%)
Frame = +2
Query: 503 EEVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 676
++VLC+ VAVG++ M ++ QN+ +S+NFLVSLLKK+WQNVR L++KSTMG P R++
Sbjct: 172 KKVLCMGVAVGNLSMEEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYIKSTMGKPIRVF 229
Score = 64.5 bits (150), Expect = 8e-11
Identities = 30/49 (61%), Positives = 39/49 (79%)
Frame = +3
Query: 363 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 509
SE++IKQIPRLLGPG KFP L++HQES+ K++E K T+KFQ+KK
Sbjct: 130 SEAIIKQIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKK 173
>05_07_0079 -
27539389-27539892,27540059-27540343,27540453-27540550,
27540951-27541042,27541155-27541259,27541360-27541567,
27542469-27542472,27542742-27542765,27545025-27546266
Length = 853
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 515 CLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKS 649
C + VG +DM ++ +NV ++ V + K W NVRSLH+K+
Sbjct: 195 CSGIKVGRLDMKEEDTVENVMAAVEAAVENVPKKWANVRSLHLKA 239
>04_04_0401 - 24946801-24947562
Length = 253
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +2
Query: 515 CLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 676
C +V VGH M +E +NV ++ + + + W+NVR+LH+K+ LY
Sbjct: 152 CRAVRVGHAAMAREEAVENVVAAVEAAAACVPRKWRNVRALHVKAPESVALPLY 205
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 85 SSKDKKRNFLETVELQIGLKNYDPQK-DKRFSGTVKLKYIPRPKMQVCVLGDQQHCDELK 261
S+ +KKRNF ETVE + L DP++ D+ G + L + ++V V + DE +
Sbjct: 279 SANEKKRNFTETVEAHVML-GVDPRRGDQMVRGALTLPHGTGKTVRVAVFAEGPAADEAR 337
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +3
Query: 366 ESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKC 512
E+L QI +L G G + ++ L+ ESMT++ D+++ + + +KC
Sbjct: 1735 ETLRAQIDQLQGDGAEQMNRYQSLMLELESMTKQRDDLQEKLGQEEQKC 1783
>02_05_1241 -
35189111-35189389,35189604-35189711,35189982-35190713,
35190811-35191230,35191484-35191565,35191719-35192002,
35193104-35193256
Length = 685
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 560 LAQNVHLSINFLVSLLKKH 616
+ + VHLS+NF++ L+KKH
Sbjct: 302 IVEGVHLSLNFVMGLMKKH 320
>09_06_0364 +
22554082-22554225,22554306-22554520,22554671-22554752,
22554976-22555371,22555553-22556293,22556420-22556551,
22556981-22557367
Length = 698
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 542 DMTPDELAQNVHLSINFLVSLLKKH 616
D + + VHLS+NF++ L++KH
Sbjct: 262 DRKESVVVEGVHLSLNFVMGLMRKH 286
>03_02_0829 -
11599665-11600364,11600853-11601076,11601786-11602000,
11602300-11602377,11602593-11603907
Length = 843
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 184 QCRRNACPSVGHSSSDQFEALQSPKS 107
Q RN PS+ H +SD F + SP S
Sbjct: 81 QKSRNLSPSISHQASDSFSPVPSPLS 106
>03_02_0221 +
6533643-6533687,6533860-6533955,6535323-6535682,
6537106-6537177,6537374-6537697
Length = 298
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 217 AFSAAVCILALQCRRNACPSVGH 149
A A VCI L+CR+ CP H
Sbjct: 110 ASRAEVCIFCLRCRQVLCPRCSH 132
>01_06_0026 + 25738960-25739075,25740385-25740733,25740825-25741511
Length = 383
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 595 KEVDGKMHILSKL-IRSHVHMANCYRKTQHFFIWNLMVPLTSSIF-CVMDSWWERR 434
K+V IL + +R +V M C ++ Q F+W+ PL +F ++ S W R
Sbjct: 321 KDVPDLKKILQGITLRKYVAMHGCVKRLQRHFLWHAR-PLRYDLFHMILHSIWLSR 375
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,330,671
Number of Sequences: 37544
Number of extensions: 402519
Number of successful extensions: 1064
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -