Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10608
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6677| Best HMM Match : Ribosomal_L1 (HMM E-Value=0.4)               82   5e-16
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.38 
SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)               29   4.7  
SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07)                 28   6.2  
SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_6677| Best HMM Match : Ribosomal_L1 (HMM E-Value=0.4)
          Length = 81

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 36/49 (73%), Positives = 44/49 (89%)
 Frame = +3

Query: 363 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 509
           S+SLIKQIPR+LGPGLNKAGKFP  ++H E+M QKI++V+ TIKFQMKK
Sbjct: 28  SDSLIKQIPRILGPGLNKAGKFPTPINHNENMVQKIEDVRSTIKFQMKK 76


>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1291

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 11/44 (25%), Positives = 27/44 (61%)
 Frame = +2

Query: 521 SVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKST 652
           ++ VGH      E+  N+  +++ L  ++ + W N++SL++K++
Sbjct: 322 AMKVGHTGQEKKEVISNIVEAVSGLAKIIPRGWNNIQSLNIKTS 365


>SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 605 AVTQGS*WKDAHSEQAHQESCPH 537
           AV+    WK  H+ Q  QESCPH
Sbjct: 103 AVSNPCFWKWIHAHQTAQESCPH 125


>SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
          Length = 1243

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = +1

Query: 127 LQIGLKNYDPQKDKRFSGTVKLKYIPRPKM-QVC---VLGDQQHCDEL 258
           LQ G K YDP K+K      K KY+  PK+ + C   ++  +QHC +L
Sbjct: 336 LQCGKKFYDPLKEK----CAKNKYVYNPKIYKYCYGRIIPVKQHCIKL 379


>SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 518 LSVAVGHVDMTPDELAQNVHLSINFLVSLLKKH 616
           +S AV  +  TPD ++  V   +N L SL KKH
Sbjct: 654 VSSAVSEMSDTPDNVSNQVEKVVNELKSLKKKH 686


>SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1402

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = +1

Query: 127 LQIGLKNYDPQKDKRFSGTVKLKYIPRPKM-QVC---VLGDQQHCDEL 258
           LQ G K YDP K+K      K KY+  PK+ + C   ++  +QHC +L
Sbjct: 336 LQCGKKFYDPLKEK----CAKNKYVYNPKIYKYCYGRIIPVKQHCIKL 379


>SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07)
          Length = 1286

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 582 PSTSLCHCSRNTGRMSD 632
           PS   CHC  N GRM D
Sbjct: 526 PSDPTCHCPSNNGRMKD 542


>SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 81  KNGIHALVERVTRHFRRHFVCQRTTYH 1
           K G+H ++ +VT + RRH++ + T  H
Sbjct: 284 KKGVHMILGQVTGNARRHYIPKFTANH 310


>SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 380 ADSPFVGSRFEQSW*IPWSSLPPGVHDAED 469
           +DSP+ G+   + W I  S+ P  VHD  D
Sbjct: 725 SDSPYSGNSSGEDWDIYSSAQPTAVHDLPD 754


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,457,858
Number of Sequences: 59808
Number of extensions: 465330
Number of successful extensions: 1133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)