Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10608
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   113   1e-25
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...    95   4e-20
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...    95   4e-20
Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical p...    28   5.5  
AC024877-11|AAF60897.2|  621|Caenorhabditis elegans Hypothetical...    28   5.5  
AC024877-10|ABA00174.1|  613|Caenorhabditis elegans Hypothetical...    28   5.5  
Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian el...    27   9.6  

>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  113 bits (272), Expect = 1e-25
 Identities = 50/74 (67%), Positives = 61/74 (82%)
 Frame = +1

Query: 34  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 213
           SKVSR++L E +  VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP 
Sbjct: 2   SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPN 61

Query: 214 MQVCVLGDQQHCDE 255
           M+VCV GDQ H DE
Sbjct: 62  MKVCVFGDQHHLDE 75



 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 43/58 (74%), Positives = 52/58 (89%)
 Frame = +2

Query: 503 EEVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 676
           ++VLCLSVAVGHV +T +EL  N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 159 KKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 216



 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 35/49 (71%), Positives = 43/49 (87%)
 Frame = +3

Query: 363 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 509
           SESLIKQIPR+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKK
Sbjct: 112 SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKK 160


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 43/58 (74%), Positives = 52/58 (89%)
 Frame = +2

Query: 503 EEVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 676
           ++VLCLSVAVGHV +T +EL  N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 129 KKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 186



 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 35/49 (71%), Positives = 43/49 (87%)
 Frame = +3

Query: 363 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 509
           SESLIKQIPR+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKK
Sbjct: 82  SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKK 130



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 29/38 (76%), Positives = 34/38 (89%)
 Frame = +1

Query: 142 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDE 255
           KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DE
Sbjct: 8   KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDE 45


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 43/58 (74%), Positives = 52/58 (89%)
 Frame = +2

Query: 503 EEVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 676
           ++VLCLSVAVGHV +T +EL  N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 98  KKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 155



 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 35/49 (71%), Positives = 43/49 (87%)
 Frame = +3

Query: 363 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 509
           SESLIKQIPR+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKK
Sbjct: 51  SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKK 99



 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 214 MQVCVLGDQQHCDE 255
           M+VCV GDQ H DE
Sbjct: 1   MKVCVFGDQHHLDE 14


>Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical
           protein R10E8.3 protein.
          Length = 522

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 512 TLLHLELNGS--LDFINLLRHGLLVGEKTREFTSFVQTGTQQTGN 384
           ++ HLEL GS  L+FI LL    L  +K R+ T F   G    GN
Sbjct: 353 SMAHLELKGSSELEFIQLL--DCLDAKKLRKLTIFATVGDVNNGN 395


>Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical
           protein C49F8.1 protein.
          Length = 407

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 521 SVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPP 664
           SV + H+ ++P+ L Q   L+  F  +     W+ +R   MKS +G P
Sbjct: 349 SVTIDHLRISPESLVQIARLAQAFGTN---PDWKKLRLADMKSALGTP 393


>AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical
           protein E02H9.4 protein.
          Length = 118

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 91  KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 201
           K +K N  E VEL   +KNY P+ + R    V+ KY+
Sbjct: 41  KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77


>Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical
           protein F53F4.11 protein.
          Length = 543

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +2

Query: 524 VAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPP 664
           V VGH+  +  +L +N+   +  + S     + N+RS+++ ++ G P
Sbjct: 365 VNVGHLGQSSADLKENIDTVLEKIASKCPGGFANIRSIYLGASDGKP 411


>AC024877-11|AAF60897.2|  621|Caenorhabditis elegans Hypothetical
           protein Y95B8A.12a protein.
          Length = 621

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 520 KTQHFFIWNLMVPLTSSIFCVMDSWWERRPGNLPALF 410
           K++H+ +    VPL S +FC  DS  +  P +L   F
Sbjct: 481 KSEHYIVQRQPVPLDSCVFCDADSNDQATPMSLKFAF 517


>AC024877-10|ABA00174.1|  613|Caenorhabditis elegans Hypothetical
           protein Y95B8A.12b protein.
          Length = 613

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 520 KTQHFFIWNLMVPLTSSIFCVMDSWWERRPGNLPALF 410
           K++H+ +    VPL S +FC  DS  +  P +L   F
Sbjct: 473 KSEHYIVQRQPVPLDSCVFCDADSNDQATPMSLKFAF 509


>Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical
           protein R04D3.3 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +1

Query: 4   IGGSLTNKMSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 171
           +GGS    + +   +D+L E ++ + +S K K    LET+  Q G K  D    +R
Sbjct: 189 VGGSSMEDVLTSDEKDSLSEAISNLPKSPKSKTDRDLETL-AQSGSKTRDSHSRRR 243


>AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian
           elks/cast/erc/rab6 interactingprotein homolog protein 1
           protein.
          Length = 836

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 375 IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 494
           I +IP   G GLN A ++  L    ++M +K+++   +IK
Sbjct: 142 ISRIPTGTGSGLNIAREYEQLKVEYDTMMEKLNQTMNSIK 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,601,864
Number of Sequences: 27780
Number of extensions: 360826
Number of successful extensions: 904
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)