Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10608
(690 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB) 109 1e-24
At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB) 109 1e-24
At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA) si... 108 4e-24
At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC) 103 1e-22
At2g42650.1 68415.m05278 60S ribosomal protein-related similar t... 41 7e-04
At3g58660.1 68416.m06538 60S ribosomal protein-related contains ... 39 0.003
At1g06380.1 68414.m00674 ribosomal protein-related similar to PB... 35 0.058
At5g41880.1 68418.m05099 DNA primase small subunit family contai... 32 0.41
At5g10610.1 68418.m01228 cytochrome P450 family protein similar ... 31 0.72
At1g08400.1 68414.m00929 chromosome structural maintenance prote... 30 1.3
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta... 30 1.7
At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related conta... 29 2.2
At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related conta... 29 2.2
At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitam... 29 3.8
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 29 3.8
At1g59640.2 68414.m06708 basic helix-loop-helix (bHLH) family pr... 27 8.9
>At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 109 bits (263), Expect = 1e-24
Identities = 47/74 (63%), Positives = 61/74 (82%)
Frame = +1
Query: 34 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 213
SK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 214 MQVCVLGDQQHCDE 255
M++C+LGD QH +E
Sbjct: 62 MKICMLGDAQHVEE 75
Score = 87.0 bits (206), Expect = 1e-17
Identities = 37/58 (63%), Positives = 50/58 (86%)
Frame = +2
Query: 503 EEVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 676
++VLC+ VAVG++ M +L QNV +S+NFLVSLLKK+WQNVR L++KSTMGPPQR++
Sbjct: 159 KKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
Score = 83.8 bits (198), Expect = 1e-16
Identities = 37/49 (75%), Positives = 44/49 (89%)
Frame = +3
Query: 363 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 509
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KK
Sbjct: 112 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKK 160
>At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 109 bits (263), Expect = 1e-24
Identities = 47/74 (63%), Positives = 61/74 (82%)
Frame = +1
Query: 34 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 213
SK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 214 MQVCVLGDQQHCDE 255
M++C+LGD QH +E
Sbjct: 62 MKICMLGDAQHVEE 75
Score = 87.0 bits (206), Expect = 1e-17
Identities = 37/58 (63%), Positives = 50/58 (86%)
Frame = +2
Query: 503 EEVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 676
++VLC+ VAVG++ M +L QNV +S+NFLVSLLKK+WQNVR L++KSTMGPPQR++
Sbjct: 159 KKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
Score = 83.8 bits (198), Expect = 1e-16
Identities = 37/49 (75%), Positives = 44/49 (89%)
Frame = +3
Query: 363 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 509
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KK
Sbjct: 112 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKK 160
>At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA)
similar to 60S ribosomal protein L10A GB:AAC73045
GI:3860277 from [Arabidopsis thaliana]
Length = 216
Score = 108 bits (259), Expect = 4e-24
Identities = 46/74 (62%), Positives = 60/74 (81%)
Frame = +1
Query: 34 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 213
SK+ + + E + + S+ KKRNF+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 214 MQVCVLGDQQHCDE 255
M++C+LGD QH +E
Sbjct: 62 MKICMLGDAQHVEE 75
Score = 86.2 bits (204), Expect = 2e-17
Identities = 36/58 (62%), Positives = 50/58 (86%)
Frame = +2
Query: 503 EEVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 676
++VLC+ VAVG++ M ++ QNV +S+NFLVSLLKK+WQNVR L++KSTMGPPQR++
Sbjct: 159 KKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
Score = 84.2 bits (199), Expect = 7e-17
Identities = 37/49 (75%), Positives = 44/49 (89%)
Frame = +3
Query: 363 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 509
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KK
Sbjct: 112 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKK 160
>At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC)
Length = 217
Score = 103 bits (247), Expect = 1e-22
Identities = 44/75 (58%), Positives = 61/75 (81%), Gaps = 1/75 (1%)
Frame = +1
Query: 34 SKVSRDTLYECVNAVLQSSKDKK-RNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 210
SK+ + + E +++++ K+ K RNF ET+ELQIGLKNYDPQKDKRFSG+VKL ++PRP
Sbjct: 2 SKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRP 61
Query: 211 KMQVCVLGDQQHCDE 255
KM++C+LGD QH +E
Sbjct: 62 KMKICMLGDAQHVEE 76
Score = 84.2 bits (199), Expect = 7e-17
Identities = 37/49 (75%), Positives = 44/49 (89%)
Frame = +3
Query: 363 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 509
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KK
Sbjct: 113 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKK 161
Score = 83.8 bits (198), Expect = 1e-16
Identities = 35/58 (60%), Positives = 49/58 (84%)
Frame = +2
Query: 503 EEVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 676
++VLC+ VAVG++ M ++ QNV +S+NFLVSLLKK+WQNVR L++KSTMGPP R++
Sbjct: 160 KKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217
>At2g42650.1 68415.m05278 60S ribosomal protein-related similar to
PBK1 protein (GI:3668141) [Homo sapiens]; weak
similarity to 60S ribosomal protein L10a.
(Swiss-Prot:Q9SW75) [Chlamydomonas reinhardtii]
Length = 372
Score = 41.1 bits (92), Expect = 7e-04
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +2
Query: 515 CLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 646
C ++ V + M D++ +NV ++N +V +L W+ +RSLH+K
Sbjct: 186 CSAIKVAKLSMESDDIVENVTATLNGVVDVLPSRWKYIRSLHLK 229
>At3g58660.1 68416.m06538 60S ribosomal protein-related contains
weak similarity to 60S ribosomal protein L10A (CSA-19)
(NEDD-6) (Swiss-Prot:P53026) [Mus musculus]
Length = 446
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +2
Query: 515 CLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 646
C + VG + M E+ +NV ++N LV L W VRSLH+K
Sbjct: 206 CSVIKVGKLSMDICEITENVMATLNGLVEFLPNKWTYVRSLHLK 249
>At1g06380.1 68414.m00674 ribosomal protein-related similar to PBK1
protein (GI:3668141) {Homo sapiens}; weakly similar to
60S ribosomal protein L10a. (SP:Q963B6) [Fall armyworm]
{Spodoptera frugiperda}
Length = 254
Score = 34.7 bits (76), Expect = 0.058
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 515 CLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 646
C V V + M +E+A+NV ++N + L+ W+NV+ H+K
Sbjct: 197 CSVVKVAKLSMGRNEIAENVVAAMNGIGDLVPGRWKNVKLFHLK 240
>At5g41880.1 68418.m05099 DNA primase small subunit family contains
Pfam profile: PF01896 DNA primase small subunit
Length = 407
Score = 31.9 bits (69), Expect = 0.41
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Frame = +1
Query: 13 SLTNKMSSKVSRDTLYECVNAVLQSSKDKK---RNFLETVELQIGLKNYDPQKDKRFSGT 183
S + +S + + +E + LQS ++K R +E + D + K+ +
Sbjct: 275 SARSSLSEEATSLLRWEQLKKALQSKRNKALSLRTCVEEIVFTFTYPRIDLEVSKQMNHL 334
Query: 184 VKLKYIPRPKM-QVCVLGDQQHCDELKP 264
+K + PK +VCV D +CDE P
Sbjct: 335 LKAPFCVHPKTGRVCVPIDPNNCDEFDP 362
>At5g10610.1 68418.m01228 cytochrome P450 family protein similar to
Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis
thaliana]; similar to cytochrome P450, Helianthus
tuberosus, EMBL:HTCYP81L
Length = 500
Score = 31.1 bits (67), Expect = 0.72
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 112 LETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVC 225
L V + G+K DP+ +KRF KL++ M VC
Sbjct: 185 LRLVSGKRGVKKSDPESEKRFLDDFKLRFFSSMSMNVC 222
>At1g08400.1 68414.m00929 chromosome structural maintenance
protein-related contains weak similarity to
RAD50-interacting protein 1 [Homo sapiens]
gi|11967435|gb|AAG42101
Length = 804
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 31 SSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 171
+SKV + N +L DKK ++ ++ L GL+ ++ QK+KR
Sbjct: 232 TSKVEHGEVDSIPNPLLLMQGDKKESYSQSFLLLCGLQQHNTQKEKR 278
>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 738
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 560 LAQNVHLSINFLVSLLKKH 616
+ + VHLS+NF++ L+KKH
Sbjct: 322 IVEGVHLSLNFVMGLMKKH 340
>At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 698
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 560 LAQNVHLSINFLVSLLKKH 616
+ + VHLS+NF++ L+KKH
Sbjct: 279 VVEGVHLSLNFVMGLMKKH 297
>At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 717
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 560 LAQNVHLSINFLVSLLKKH 616
+ + VHLS+NF++ L+KKH
Sbjct: 298 VVEGVHLSLNFVMGLMKKH 316
>At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitamin
E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)
identical to SP|Q94FY7 Tocopherol cyclase, chloroplast
precursor (Vitamin E deficient 1) (Sucrose export
defective 1) {Arabidopsis thaliana}
Length = 488
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 212 FGRGMYFSFTVPEKRLSFC 156
F G YF ++PEKR SFC
Sbjct: 91 FFEGWYFRVSIPEKRESFC 109
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; contains TIGRFAM TIGR00864:
polycystin cation channel protein; similar to
fimbriae-associated protein Fap1 [Streptococcus
parasanguinis] (GI:3929312)
Length = 1498
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -3
Query: 190 ALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEERHSRTRRACHETL*TTFCLSE 14
A+ + HS + EALQS S V +++ SR R H TT L+E
Sbjct: 871 AVMAEERSARKAMHSKRQEIEALQSMISRVKSAASVDDIDSRVRNMEHTMQHTTLSLNE 929
>At1g59640.2 68414.m06708 basic helix-loop-helix (bHLH) family
protein
Length = 343
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 529 CYRKTQHFFIWNLMVPLTSSI 467
C RK HF +WNL + S+
Sbjct: 320 CLRKIYHFLLWNLKYKIQKSV 340
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,667,195
Number of Sequences: 28952
Number of extensions: 332188
Number of successful extensions: 831
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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