Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10607
         (320 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)              150   2e-37
SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)                   28   1.9  
SB_11280| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.9  
SB_2508| Best HMM Match : RVT_1 (HMM E-Value=1e-05)                    26   7.9  
SB_15327| Best HMM Match : EGF (HMM E-Value=7.3)                       26   7.9  
SB_836| Best HMM Match : DUF82 (HMM E-Value=5.3)                       23   9.8  

>SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)
          Length = 260

 Score =  150 bits (364), Expect = 2e-37
 Identities = 65/79 (82%), Positives = 73/79 (92%)
 Frame = +3

Query: 3   EYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGK 182
           EYEL +  FSATGNFGFGIQEHIDLGIKYDPSIGIYG+DF+VVLGRPGFN++ R+ K G+
Sbjct: 83  EYELVKGCFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFFVVLGRPGFNISKRKHKQGR 142

Query: 183 VGFPHRLTKEDAMKWFQQK 239
           VGFPHRLTK+DAMKWFQQK
Sbjct: 143 VGFPHRLTKDDAMKWFQQK 161


>SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)
          Length = 551

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 15  RRDNFSATGNFGFGIQEHIDLGIKYD 92
           ++ ++SATG+F   ++EHI  G + D
Sbjct: 306 KKSHYSATGSFDGSVEEHISEGAQED 331


>SB_11280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -2

Query: 259 INMIPSYFCWNHFIASSFVRRWGNPTFPVLRLLCATLKP 143
           I M+ + + ++  +AS  +R W +P  P+++ +    KP
Sbjct: 146 IAMVVTVWLYSFVVASLSLRNWTSPEGPLVKTINGCFKP 184


>SB_2508| Best HMM Match : RVT_1 (HMM E-Value=1e-05)
          Length = 525

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 179 SCLTPSVCYVETWPAKYDVKVQSINSN*GIVLDTQVNVF 63
           SCL  S   ++  P+ YD+   SINS    ++D  +N F
Sbjct: 52  SCLKKSKLCLDNTPSLYDLDTFSINS----IVDNNINNF 86


>SB_15327| Best HMM Match : EGF (HMM E-Value=7.3)
          Length = 292

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 78  GIKYDPSIGIYGLDFYVVLGRPGF 149
           G+K  P IG +G  FY+ +  PGF
Sbjct: 208 GVKASPVIGFHGTGFYLAV--PGF 229


>SB_836| Best HMM Match : DUF82 (HMM E-Value=5.3)
          Length = 168

 Score = 23.4 bits (48), Expect(2) = 9.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 85  LIPKSMCS*IPKPKL 41
           LIPKS+ S +PKP L
Sbjct: 64  LIPKSLASSLPKPIL 78



 Score = 20.6 bits (41), Expect(2) = 9.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 187 PTFPVLRLLCATLKPG 140
           PT P   L C T++PG
Sbjct: 18  PTTPSPSLKCPTVQPG 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,408,929
Number of Sequences: 59808
Number of extensions: 182517
Number of successful extensions: 448
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 425519554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)