Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10607
         (320 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...   142   7e-35
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...   140   2e-34
U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical pr...    30   0.43 
Z54327-1|CAA91119.1|  569|Caenorhabditis elegans Hypothetical pr...    25   1.3  
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr...    27   2.3  
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ...    27   2.3  
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.      27   2.3  
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr...    27   4.0  
AL132952-7|CAB61139.2|  670|Caenorhabditis elegans Hypothetical ...    26   5.3  
Z82265-4|CAB05174.1|  293|Caenorhabditis elegans Hypothetical pr...    26   7.0  
U97000-4|AAC47994.1|  395|Caenorhabditis elegans Hypothetical pr...    26   7.0  
AC006722-4|AAK68419.2|  279|Caenorhabditis elegans Hypothetical ...    26   7.0  
AC006645-9|AAF39841.2|  293|Caenorhabditis elegans Nematode asta...    26   7.0  
Z81505-2|CAB04121.2|  505|Caenorhabditis elegans Hypothetical pr...    25   9.2  
AF119388-1|AAD31643.1|  457|Caenorhabditis elegans phenylalanine...    25   9.2  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score =  142 bits (343), Expect = 7e-35
 Identities = 63/88 (71%), Positives = 74/88 (84%)
 Frame = +3

Query: 3   EYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGK 182
           EYEL ++NFS TGNFGFG+QEHIDLGIKYDPSIGIYG+DFYVVL R G  +A RRR  G+
Sbjct: 98  EYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYGMDFYVVLDRAGRRIAKRRRAPGR 157

Query: 183 VGFPHRLTKEDAMKWFQQKYDGIILIAK 266
           VG  HR+ +E+++KWFQQKYDGIIL  K
Sbjct: 158 VGPSHRVEREESIKWFQQKYDGIILPPK 185


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score =  140 bits (339), Expect = 2e-34
 Identities = 62/88 (70%), Positives = 72/88 (81%)
 Frame = +3

Query: 3   EYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGK 182
           EYEL ++NFS TGNFGFG+QEHIDLGIKYDP IGIYG+DFYVVL R G  V+ RRR  G+
Sbjct: 98  EYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMDFYVVLNRNGVRVSKRRRAPGR 157

Query: 183 VGFPHRLTKEDAMKWFQQKYDGIILIAK 266
           +G  HR+ KE+ +KWFQQKYDGIIL  K
Sbjct: 158 IGPSHRVDKEETIKWFQQKYDGIILPPK 185


>U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical
           protein F18F11.3 protein.
          Length = 427

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 90  DPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKE 212
           DP  GI G+  + V G   F +A R+  +GK     RL K+
Sbjct: 160 DPDTGISGISRFSVEGDSSFTLAKRKCSSGKCSTQLRLAKK 200


>Z54327-1|CAA91119.1|  569|Caenorhabditis elegans Hypothetical
           protein C26D10.1 protein.
          Length = 569

 Score = 25.0 bits (52), Expect(2) = 1.3
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +3

Query: 99  IGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILIAKQSKI 278
           + I G+   V+LG  G   A  +     +G  +   K+D   W    YD I  I   SKI
Sbjct: 438 VNIEGVQHVVILGSDGKVFAMGKNTDNALGLGNWTGKDDQQHWL---YDTIQEIEFDSKI 494



 Score = 21.8 bits (44), Expect(2) = 1.3
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +3

Query: 45  FGFGIQEHIDLGIKYDPS-IGIYGLD 119
           + FG+  +  LGIK D + +G  G D
Sbjct: 391 YAFGLNNYAQLGIKVDEADVGQDGQD 416


>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical protein
            Y76A2B.1 protein.
          Length = 1057

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 21/67 (31%), Positives = 27/67 (40%)
 Frame = +1

Query: 16   GVTTSPPRVILASVFKNTLTWVSSTIPQLEFMDWTFTSYLAGQVST*HTEGVRQEKWDFP 195
            GV +S PR I ASV  + +   SST         T  ++   +    H     QE    P
Sbjct: 946  GVFSSIPRAITASVRHSEMPSSSSTTNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVP 1005

Query: 196  TASQRKM 216
            T S R M
Sbjct: 1006 TPSSRNM 1012


>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
            protein Y76A2B.1 protein.
          Length = 1057

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 21/67 (31%), Positives = 27/67 (40%)
 Frame = +1

Query: 16   GVTTSPPRVILASVFKNTLTWVSSTIPQLEFMDWTFTSYLAGQVST*HTEGVRQEKWDFP 195
            GV +S PR I ASV  + +   SST         T  ++   +    H     QE    P
Sbjct: 946  GVFSSIPRAITASVRHSEMPSSSSTTNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVP 1005

Query: 196  TASQRKM 216
            T S R M
Sbjct: 1006 TPSSRNM 1012


>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
          Length = 1057

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 21/67 (31%), Positives = 27/67 (40%)
 Frame = +1

Query: 16   GVTTSPPRVILASVFKNTLTWVSSTIPQLEFMDWTFTSYLAGQVST*HTEGVRQEKWDFP 195
            GV +S PR I ASV  + +   SST         T  ++   +    H     QE    P
Sbjct: 946  GVFSSIPRAITASVRHSEMPSSSSTTNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVP 1005

Query: 196  TASQRKM 216
            T S R M
Sbjct: 1006 TPSSRNM 1012


>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical
           protein ZC84.1 protein.
          Length = 1556

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -1

Query: 212 FLCEAVGKSHFSCLTP-SVC 156
           F C A+G  H  C TP SVC
Sbjct: 394 FQCTAIGSQHLCCPTPGSVC 413


>AL132952-7|CAB61139.2|  670|Caenorhabditis elegans Hypothetical
           protein Y51H4A.7 protein.
          Length = 670

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 95  LNWNLWTGLLRRTWP--ARFQRSTQKA*DRKSGI 190
           LNW++  G+ RR+W   A+ Q + Q+A  +  G+
Sbjct: 619 LNWDVPNGVTRRSWSGNAKAQEAIQRAEKQVDGL 652


>Z82265-4|CAB05174.1|  293|Caenorhabditis elegans Hypothetical
           protein F02H6.6 protein.
          Length = 293

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 182 FSCLTPSVCYVETWPAKYDVKVQSI 108
           F C T S  +  TWPA YD+ ++ +
Sbjct: 260 FKCNTTSGAWYNTWPA-YDIDMKEV 283


>U97000-4|AAC47994.1|  395|Caenorhabditis elegans Hypothetical
           protein F21F8.4 protein.
          Length = 395

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 51  FGIQEHIDLGIKYDPSIGIYGLDF 122
           FGI  HI    K D + GI GL F
Sbjct: 164 FGIASHISSNFKNDAAEGILGLAF 187


>AC006722-4|AAK68419.2|  279|Caenorhabditis elegans Hypothetical
           protein Y19D10A.6 protein.
          Length = 279

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 81  YPSQCVLEYRSQNYPWRRSCH 19
           Y +  ++ Y  QN PW+R  H
Sbjct: 210 YDANSIMHYNFQNLPWQRRDH 230


>AC006645-9|AAF39841.2|  293|Caenorhabditis elegans Nematode astacin
           protease protein 2 protein.
          Length = 293

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 81  YPSQCVLEYRSQNYPWRRSCH 19
           Y +  ++ Y  QN PW+R  H
Sbjct: 224 YDANSIMHYNFQNLPWQRRDH 244


>Z81505-2|CAB04121.2|  505|Caenorhabditis elegans Hypothetical
           protein F16A11.2 protein.
          Length = 505

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 51  FGIQ-EHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKED 215
           FG+  + +D+ + YD S  +  ++ ++V GRP     HR+  T      H L   D
Sbjct: 336 FGMSADDMDMQVIYDVSHNVAKMEEHMVDGRPRQLCVHRKGATRAFPAHHPLIPVD 391


>AF119388-1|AAD31643.1|  457|Caenorhabditis elegans phenylalanine
           hydroxylase protein.
          Length = 457

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 162 RRRKTGKVGFPHRLTKEDAMKWFQQKYDGI 251
           +RR   K G P     +D++ WF QK + I
Sbjct: 99  KRRFLFKTGTPKTKQNKDSVPWFPQKINDI 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,038,246
Number of Sequences: 27780
Number of extensions: 139700
Number of successful extensions: 337
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)