Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10607
(320 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A) 143 3e-35
At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 142 5e-35
At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 142 5e-35
At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C) 142 5e-35
At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo... 142 5e-35
At4g14280.1 68417.m02201 hypothetical protein 28 1.6
At3g06210.1 68416.m00714 expressed protein contains Prosite PS00... 27 2.1
At4g12230.1 68417.m01940 esterase/lipase/thioesterase family pro... 27 2.8
At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containi... 27 2.8
At5g46770.1 68418.m05761 expressed protein 26 4.9
At1g76150.1 68414.m08843 maoC-like dehydratase domain-containing... 26 6.5
At2g33290.1 68415.m04080 SET domain-containing protein (SUVH2) i... 25 8.6
>At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)
Length = 172
Score = 143 bits (346), Expect = 3e-35
Identities = 65/90 (72%), Positives = 73/90 (81%)
Frame = +3
Query: 3 EYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGK 182
EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFYVVL RPG+ VA RRR +
Sbjct: 80 EYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKAR 139
Query: 183 VGFPHRLTKEDAMKWFQQKYDGIILIAKQS 272
VG HR+TK+DAMKWFQ KY+G+IL Q+
Sbjct: 140 VGIQHRVTKDDAMKWFQVKYEGVILNKSQN 169
>At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D)
Length = 182
Score = 142 bits (344), Expect = 5e-35
Identities = 65/90 (72%), Positives = 73/90 (81%)
Frame = +3
Query: 3 EYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGK 182
EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFYVVL RPG+ VA RRR +
Sbjct: 90 EYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTR 149
Query: 183 VGFPHRLTKEDAMKWFQQKYDGIILIAKQS 272
VG HR+TK+DAMKWFQ KY+G+IL Q+
Sbjct: 150 VGIQHRVTKDDAMKWFQVKYEGVILNKSQN 179
>At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D)
Length = 172
Score = 142 bits (344), Expect = 5e-35
Identities = 65/90 (72%), Positives = 73/90 (81%)
Frame = +3
Query: 3 EYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGK 182
EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFYVVL RPG+ VA RRR +
Sbjct: 80 EYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTR 139
Query: 183 VGFPHRLTKEDAMKWFQQKYDGIILIAKQS 272
VG HR+TK+DAMKWFQ KY+G+IL Q+
Sbjct: 140 VGIQHRVTKDDAMKWFQVKYEGVILNKSQN 169
>At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)
Length = 182
Score = 142 bits (344), Expect = 5e-35
Identities = 65/90 (72%), Positives = 73/90 (81%)
Frame = +3
Query: 3 EYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGK 182
EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFYVVL RPG+ VA RRR +
Sbjct: 90 EYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTR 149
Query: 183 VGFPHRLTKEDAMKWFQQKYDGIILIAKQS 272
VG HR+TK+DAMKWFQ KY+G+IL Q+
Sbjct: 150 VGIQHRVTKDDAMKWFQVKYEGVILNKSQN 179
>At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B)
ribosomal protein L11, cytosolic, Arabidopsis thaliana,
PIR:S49033
Length = 182
Score = 142 bits (344), Expect = 5e-35
Identities = 65/90 (72%), Positives = 73/90 (81%)
Frame = +3
Query: 3 EYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGK 182
EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFYVVL RPG+ VA RRR +
Sbjct: 90 EYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTR 149
Query: 183 VGFPHRLTKEDAMKWFQQKYDGIILIAKQS 272
VG HR+TK+DAMKWFQ KY+G+IL Q+
Sbjct: 150 VGIQHRVTKDDAMKWFQVKYEGVILNKSQN 179
>At4g14280.1 68417.m02201 hypothetical protein
Length = 798
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 67 TLTWVSSTIPQLEFMDWTFTS 129
T TW SS +P L + W F S
Sbjct: 167 TRTWKSSDVPMLPYTGWVFVS 187
>At3g06210.1 68416.m00714 expressed protein contains Prosite
PS00616: Histidine acid phosphatases phosphohistidine
signature;
Length = 840
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 16 GVTTSPPRVILASVF--KNTLTWVSSTIPQLEFMDWTFTSYLAGQV 147
G+ + R+ +F + TLTW +S +P L + W + S ++
Sbjct: 182 GLREATTRIGRQEIFDRRTTLTWKNSEVPLLPYARWLYISSYVSRI 227
>At4g12230.1 68417.m01940 esterase/lipase/thioesterase family
protein low similarity to
2-hydroxy-6-ketonona-2,4-dienedoic acid hydrolase; OhpC
[Rhodococcus sp.] GI:8926386; contains Interpro entry
IPR000379
Length = 392
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 251 DTIIFLLEPLHSIFLCEAVGKSHFSCLTPSVCY 153
DTI L L+++ L + G+ + SC+ ++CY
Sbjct: 343 DTIQLLSSSLNNLILVQLAGEVYQSCVVFTLCY 375
>At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 665
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +3
Query: 30 SATGNFGFGIQEH---IDLGIKYDPSIGIYGLDFYVVLG 137
S +G G GI+ H +D GIK D +IG +D Y G
Sbjct: 304 SKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCG 342
>At5g46770.1 68418.m05761 expressed protein
Length = 133
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 123 YVVLGRPGFNVAHRRRKTGKV 185
Y +GRPG ++AH+ +K K+
Sbjct: 59 YEKIGRPGSSLAHKMKKVKKI 79
>At1g76150.1 68414.m08843 maoC-like dehydratase domain-containing
protein contains similarity to Swiss-Prot:P51659
estradiol 17 beta-dehydrogenase 4 (17-beta-HSD 4)
(17-beta-hydroxysteroid dehydrogenase 4) [Homo sapiens];
contains Pfam profile PF01575: MaoC like domain
Length = 309
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 57 IQEHIDL-GIKYDPSIGIYGLDFYVVLGRP 143
+ E +DL G KYDPS+ ++G Y+ + RP
Sbjct: 77 LTEGLDLPGFKYDPSLLLHGQQ-YIEIYRP 105
>At2g33290.1 68415.m04080 SET domain-containing protein (SUVH2)
identical to SUVH2 [Arabidopsis thaliana] GI:13517745;
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain; identical to
cDNA SUVH2 (SUVH2) GI:13517744
Length = 651
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Frame = +3
Query: 24 NFSATGNFGFGIQEHIDLGIKYDPSI--------GIYGL-DFYVVLGRPGFNV 155
N + +GI+ + GIKY+ SI G+Y + D++ +G+ GF V
Sbjct: 295 NLGMERSMHYGIEVRVIRGIKYENSISSKVYVYDGLYKIVDWWFAVGKSGFGV 347
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,692,949
Number of Sequences: 28952
Number of extensions: 132209
Number of successful extensions: 360
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 350523880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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