Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10606
         (702 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   3.2  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    22   4.2  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    22   4.2  
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    21   7.4  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = -1

Query: 579 QAERLVHGAAHGQIVHRHVTQGAIRSIMNKPLN 481
           + E L+H   + Q  + H ++  ++ I+N+P++
Sbjct: 314 EQEELIHRLVYFQNEYEHPSEEDVKRIINQPMD 346


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
 Frame = +1

Query: 619 CPAGW---NPDTNADTIKPNP 672
           CP G+   N + N D  KPNP
Sbjct: 210 CPKGFQGQNCELNVDDCKPNP 230


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
          protein 11 protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 23 KNVVHCEATKSKCTVAG 73
          KN V+C   K KCT  G
Sbjct: 44 KNYVNCLLEKGKCTPDG 60


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 210 TGKYVVLFFYPLDFTL 257
           T K+    F+P+DFTL
Sbjct: 352 TSKFSAAGFFPVDFTL 367


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
          protein 18 protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 23 KNVVHCEATKSKCTVAG 73
          KN V+C   K +CT  G
Sbjct: 39 KNYVNCLLDKGRCTPEG 55


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,120
Number of Sequences: 336
Number of extensions: 3498
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)