Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10606
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   113   2e-26
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   6.0  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.9  
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    25   7.9  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    25   7.9  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   7.9  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  113 bits (272), Expect = 2e-26
 Identities = 54/89 (60%), Positives = 69/89 (77%), Gaps = 1/89 (1%)
 Frame = +2

Query: 242 IGFHIVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAWINTPRKDGGLGKMEIPLL 421
           + F  VCPTE++AFS+ A  FA  + QVI  STDSE+SHLA+INTPRK+GGLG + IPLL
Sbjct: 42  LDFTFVCPTEIVAFSEAASKFAERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLL 101

Query: 422 ADYKKQISKDYDVLLDD-GFALRGLFIID 505
           AD   ++S+DY VL++D G A RGLF+ID
Sbjct: 102 ADPSHKVSRDYGVLIEDAGVAFRGLFLID 130



 Score = 79.8 bits (188), Expect = 3e-16
 Identities = 37/65 (56%), Positives = 49/65 (75%)
 Frame = +1

Query: 505 PYGTLRHMSVNDLPVGRSVDETLRLVKAFQFADKHGEVCPAGWNPDTNADTIKPNPKDSK 684
           P G LR +++NDLPVGRSVDE LRL+ AFQF ++HGEVCPA W+    +DTI  + K+ +
Sbjct: 131 PKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANWH--KGSDTI--DTKNPE 186

Query: 685 EYFQK 699
           +YF K
Sbjct: 187 KYFSK 191



 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 27/42 (64%), Positives = 34/42 (80%)
 Frame = +3

Query: 129 KVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFT 254
           ++ KPAPDF  TAVVNG F ++KL+D+ GK+V L FYPLDFT
Sbjct: 4   QIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFT 45


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 631  WNPDTNADTIKPNPKDS 681
            WNP+   D+IK NP+ S
Sbjct: 1219 WNPEYTNDSIKSNPEGS 1235


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +2

Query: 263 PTELIAFSDKAKDFAG-IDCQVIGVSTDSEFSHLAWINTPRKD--GGLGKMEIP 415
           PT+L+AF  + + + G +  +V+ VS D E   L  +N P ++  G  G M  P
Sbjct: 182 PTKLVAFKQRKERYPGELQWEVL-VSQDEE--RLRKLNLPLREPHGSTGPMSTP 232


>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 432 KNRFQKIMMYYSMMGLH*EVCS*STVWHPA 521
           +N  + + + Y  +G+   VC+  T+W PA
Sbjct: 153 ENLTKALAVRYGPLGIRVNVCAPGTIWSPA 182


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 66  SPAFKVAKRINFSTTSTTRAPKVQKPA 146
           +PA KV+ R +FS      AP V++PA
Sbjct: 160 NPAVKVSLRQSFSHLCHDEAPMVRRPA 186


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 14  HARKNVVHCEATKSKCTVAGFQSSKKD 94
           H  K+  HC     KC+V GF    +D
Sbjct: 813 HLGKSCPHCGQPLPKCSVCGFSLGDED 839


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,924
Number of Sequences: 5004
Number of extensions: 59535
Number of successful extensions: 200
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)