Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10606
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700... 76 3e-14
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 73 2e-13
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 40 0.003
12_01_0809 + 7422137-7422251,7425578-7426353 33 0.29
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 30 2.0
06_03_0251 + 18715023-18715106,18715274-18715396,18715509-187156... 30 2.0
03_05_0744 + 27336697-27337131,27337329-27337787,27340852-273424... 30 2.0
06_01_0671 - 4899611-4899829,4900870-4901448 29 3.6
03_01_0418 - 3211687-3211933,3212016-3212164,3212443-3212551,321... 29 3.6
09_02_0548 - 10467342-10468810,10470309-10471632 29 4.7
02_05_0684 - 30880527-30880753,30881952-30882124,30882687-308827... 29 4.7
01_06_1608 - 38612754-38616947,38617030-38617095 29 4.7
12_01_0286 - 2127622-2127897,2128611-2128997,2129195-2129550,212... 28 8.3
11_08_0085 + 28264399-28266186 28 8.3
>04_03_0889 +
20568984-20569037,20569271-20569345,20569981-20570088,
20572066-20572179,20572393-20572509
Length = 155
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/62 (53%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Frame = +1
Query: 511 GTLRHMSVNDLPVGRSVDETLRLVKAFQFADKH-GEVCPAGWNPDTNADTIKPNPKDSKE 687
G ++H ++N+L +GRSVDETLR ++A Q+ ++ EVCPAGW P ++KP+PKDSKE
Sbjct: 93 GVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKP--GEKSMKPDPKDSKE 150
Query: 688 YF 693
YF
Sbjct: 151 YF 152
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 257 VCPTELIAFSDKAKDFAGIDCQVIGVSTDS 346
V E+ AFSD+ ++F I+ +V+GVS DS
Sbjct: 49 VSSAEITAFSDRYEEFEKINTEVLGVSIDS 78
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 72.9 bits (171), Expect = 2e-13
Identities = 33/54 (61%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Frame = +2
Query: 350 FSHLAWINTPRKDGGLGKMEIPLLADYKKQISKDYDVLL-DDGFALRGLFIIDR 508
FSHLAW+ T RK GGLG ++ PL++D K ISK + VL+ D G ALRGLFIID+
Sbjct: 212 FSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQGIALRGLFIIDK 265
Score = 72.9 bits (171), Expect = 2e-13
Identities = 32/62 (51%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Frame = +1
Query: 511 GTLRHMSVNDLPVGRSVDETLRLVKAFQFA-DKHGEVCPAGWNPDTNADTIKPNPKDSKE 687
G ++H ++N+L +GRSVDET+R ++A Q+ D EVCPAGW P ++KP+PK SKE
Sbjct: 267 GVIQHSTINNLAIGRSVDETMRTLQALQYVQDNPDEVCPAGWKPGDK--SMKPDPKGSKE 324
Query: 688 YF 693
YF
Sbjct: 325 YF 326
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/45 (64%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Frame = +3
Query: 123 APKVQKPAPDFSATAVVNGEFNQLKLSDFTG-KYVVLFFYPLDFT 254
AP V APDF A AV + EF +KLSD+ G KYV+LFFYPLDFT
Sbjct: 67 APLVGNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFT 111
Score = 42.3 bits (95), Expect = 4e-04
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = +2
Query: 242 IGFHIVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFS 355
+ F VCPTE+ AFSD+ +F ++ +++GVS DS +S
Sbjct: 108 LDFTFVCPTEITAFSDRYDEFEKLNTEILGVSIDSVWS 145
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = +2
Query: 248 FHIVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAWINTPRKDGGLGKMEIPLLAD 427
F VC TEL A + AK+F +++G+S D SH WI ++ P++AD
Sbjct: 77 FTPVCTTELAAMAGYAKEFDKRGVKLLGISCDDVQSHKDWIKDIEAYKPGNRVTYPIMAD 136
Query: 428 YKKQISKDYDVLLDD 472
++ K +++ D
Sbjct: 137 PSREAIKQLNMVDPD 151
Score = 37.5 bits (83), Expect = 0.010
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 547 VGRSVDETLRLVKAFQFADKHGEVCPAGWNPDTNADTIKPNPKD--SKEYF 693
VGR++DE +R V A Q A KH P W P I P D +KE F
Sbjct: 184 VGRNMDEVVRAVDALQTAAKHAVATPVNWKPGERV-VIPPGVSDDEAKEKF 233
>12_01_0809 + 7422137-7422251,7425578-7426353
Length = 296
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = -2
Query: 668 FGLMVSALVSGFQPAGHTSPCLSANWKALTRRSVSSTER 552
FG+++ L++G P H SP SA++ A + S ++T+R
Sbjct: 169 FGVVLMELLTGRGPGDHASPSTSASFSAPSSSSAATTDR 207
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/72 (25%), Positives = 33/72 (45%)
Frame = +2
Query: 248 FHIVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAWINTPRKDGGLGKMEIPLLAD 427
F VC TEL + A +F +++G S D SH WI ++ P++AD
Sbjct: 42 FTPVCTTELSEMAGYAGEFDKRGVKLLGFSCDDVESHKDWIKDIEAYKPGRRVGFPIVAD 101
Query: 428 YKKQISKDYDVL 463
++ + +++
Sbjct: 102 PDREAIRQLNMI 113
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +3
Query: 189 QLKLSDFTGK-YVVLFFYPLDFT 254
+++L DF G YV++F +P DFT
Sbjct: 21 KIRLHDFVGDAYVIIFSHPADFT 43
>06_03_0251 +
18715023-18715106,18715274-18715396,18715509-18715611,
18716061-18716134,18716208-18716288,18716370-18716522,
18717435-18717506,18718313-18718396
Length = 257
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 3 KSLLTHAKMSFI--VKQLSRSVLSPAFKVAKRINFSTTSTTRAPKVQ-KPAPDFSATAVV 173
++ +TH K F+ QL +VLS K+ ++ + K KP D SA+ +
Sbjct: 128 EAAVTHCKGHFVNPTNQLCANVLSTIHKLMSEVSDGNILEDKCVKAAPKPTIDVSASRAL 187
Query: 174 NGEFNQL 194
E+NQL
Sbjct: 188 LEEYNQL 194
>03_05_0744 +
27336697-27337131,27337329-27337787,27340852-27342418,
27342641-27343044
Length = 954
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 650 ALVSGFQPAG--HTSPCLSANWKALTRRSVSSTERPTGRSFTDM*RRV 513
A+ G P +P SA W AL RRS ++T R GR ++ RRV
Sbjct: 84 AMEGGEDPGSPPRAAPAPSACWSALCRRSPAAT-RKIGRKIQELNRRV 130
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 29.1 bits (62), Expect = 3.6
Identities = 25/84 (29%), Positives = 44/84 (52%)
Frame = +3
Query: 3 KSLLTHAKMSFIVKQLSRSVLSPAFKVAKRINFSTTSTTRAPKVQKPAPDFSATAVVNGE 182
+S + HA +++QLS + A +VA+ + S+ + K AP+F+ + +
Sbjct: 84 RSTMMHAAAWLLLQQLSPA----AARVARAAD--DDSSVQVSK-GSAAPNFTLR---DQD 133
Query: 183 FNQLKLSDFTGKYVVLFFYPLDFT 254
+ LS F G+ VV++FYP D T
Sbjct: 134 GRAVSLSKFKGRPVVVYFYPADET 157
>03_01_0418 -
3211687-3211933,3212016-3212164,3212443-3212551,
3212650-3212840,3212967-3213102,3213216-3213716,
3213819-3213923,3214008-3214095,3214195-3214266,
3214692-3214762,3215726-3216008,3216388-3216463
Length = 675
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -2
Query: 689 YSLLSLGFGLMVSALVSGFQPAGHTSPCLSAN 594
YS +S G+G S+L +PAGHT CL A+
Sbjct: 375 YSPMSYGYG-NPSSLEESHRPAGHTRYCLVAS 405
>09_02_0548 - 10467342-10468810,10470309-10471632
Length = 930
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 102 STTSTTRAPKVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTL 257
ST ++++AP +P S TA NG L D K + L LD +L
Sbjct: 10 STNNSSKAPATARPTTKGSTTASGNGRPPPTTLHDVPDKLLELILQNLDSSL 61
>02_05_0684 -
30880527-30880753,30881952-30882124,30882687-30882754,
30882860-30882973,30883281-30883438,30883516-30883654,
30883851-30883907,30884064-30884140,30884324-30884462,
30884590-30884668,30885047-30885174,30885269-30885352,
30886072-30886191,30886274-30886375,30886470-30886617,
30887404-30887749,30887851-30887968,30888309-30888370,
30888798-30888947,30889049-30889169,30889269-30889319,
30889427-30889567
Length = 933
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 215 KIRSSVLLSIGFHIVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFS 355
K+R+S L +GF +A K D GID +V+ ST SE++
Sbjct: 134 KLRTSTGLLLGFTFTLTLHNVAPPIKLVDLPGIDQRVMDDSTISEYA 180
>01_06_1608 - 38612754-38616947,38617030-38617095
Length = 1419
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 30 SFIVKQLSRSVLSPAFKVAKRINFSTTSTTRAPKVQK 140
SF+ +++SRS S +V R+ FST +T A + K
Sbjct: 165 SFLEEEISRSPYSVIVEVGPRMTFSTAFSTNAVSICK 201
>12_01_0286 -
2127622-2127897,2128611-2128997,2129195-2129550,
2129923-2130046,2130128-2130196,2131190-2131238,
2132222-2132336,2132854-2132903,2133000-2133137,
2134182-2134228
Length = 536
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 398 GKMEIPLLADYKKQISKDYDVLLDDGFA 481
G+ ++P Y +Q ++DYDVL D A
Sbjct: 341 GEQQMPYPEQYMQQSTQDYDVLADPNIA 368
>11_08_0085 + 28264399-28266186
Length = 595
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/93 (22%), Positives = 42/93 (45%)
Frame = +3
Query: 132 VQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTLYVRQSS*RSVIKLKTLLE 311
+ K PD ++NG + LS F G L +Y F + + S ++L L +
Sbjct: 444 ISKMQPDVFIQGIINGGYGASFLSRFRG---ALLYYSALFDMLDATTPRESGLRL-ALEQ 499
Query: 312 SIVR*LECPQTLSSVTSHGSTLLGRTVDWEKWK 410
+++ P L+++ G+ L+ R + +W+
Sbjct: 500 NVLG----PYALNAIACEGADLVERPEKYRQWQ 528
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,797,575
Number of Sequences: 37544
Number of extensions: 393907
Number of successful extensions: 1206
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -