Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10606
(702 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0) 126 2e-29
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012) 85 5e-17
SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 9e-16
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 1e-12
SB_45252| Best HMM Match : DIT1_PvcA (HMM E-Value=6.5e-07) 31 0.90
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_58829| Best HMM Match : HC2 (HMM E-Value=5.8) 29 3.6
SB_55365| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_43985| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_32482| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_22242| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_50986| Best HMM Match : UDPG_MGDP_dh (HMM E-Value=0) 28 8.4
SB_23043| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_8943| Best HMM Match : LTXXQ (HMM E-Value=0.45) 28 8.4
>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
Length = 265
Score = 126 bits (303), Expect = 2e-29
Identities = 59/101 (58%), Positives = 72/101 (71%), Gaps = 1/101 (0%)
Frame = +2
Query: 206 FHGKIRSSVLLSIGFHIVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAWINTPRK 385
+ GK + F VCPTE+IAFSD+ +F I+C+VI S DSE+SHLAW N PRK
Sbjct: 79 YKGKYVVLFFYPLDFTFVCPTEIIAFSDRVDEFKAINCEVIACSVDSEYSHLAWTNVPRK 138
Query: 386 DGGLGKMEIPLLADYKKQISKDYDVLLDD-GFALRGLFIID 505
GG+G + IP+L+D KQISKDY VLL+D G ALRGLFIID
Sbjct: 139 KGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFIID 179
Score = 84.2 bits (199), Expect = 9e-17
Identities = 37/49 (75%), Positives = 42/49 (85%)
Frame = +1
Query: 511 GTLRHMSVNDLPVGRSVDETLRLVKAFQFADKHGEVCPAGWNPDTNADT 657
G LR +++NDLPVGRSVDETLRL++AFQF DKHGEVCPAGW P ADT
Sbjct: 182 GILRQITINDLPVGRSVDETLRLIQAFQFTDKHGEVCPAGWRP--GADT 228
Score = 76.2 bits (179), Expect = 2e-14
Identities = 41/74 (55%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Frame = +3
Query: 36 IVKQLSRSVLSPAFKVAKRINFSTTSTTRAPKVQKPAPDFSATAV-VNGEFNQLKLSDFT 212
+V Q R+ +PAF +AKR+ + + +QKPAP FS TAV +GEF LKLSD+
Sbjct: 22 LVLQQPRNA-APAFHLAKRMMSFSRADMSKTAIQKPAPAFSGTAVNKHGEFIDLKLSDYK 80
Query: 213 GKYVVLFFYPLDFT 254
GKYVVLFFYPLDFT
Sbjct: 81 GKYVVLFFYPLDFT 94
>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
Length = 704
Score = 85.0 bits (201), Expect = 5e-17
Identities = 35/49 (71%), Positives = 41/49 (83%)
Frame = +1
Query: 511 GTLRHMSVNDLPVGRSVDETLRLVKAFQFADKHGEVCPAGWNPDTNADT 657
G LR +++NDLPVGRSVDETLRL++AFQF DKHGEVCPAGW P + T
Sbjct: 51 GILRQITINDLPVGRSVDETLRLIQAFQFTDKHGEVCPAGWRPGADTGT 99
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/46 (69%), Positives = 37/46 (80%), Gaps = 1/46 (2%)
Frame = +2
Query: 371 NTPRKDGGLGKMEIPLLADYKKQISKDYDVLLDD-GFALRGLFIID 505
N PRK GG+G + IP+L+D KQISKDY VLL+D G ALRGLFIID
Sbjct: 3 NVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFIID 48
>SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 81.0 bits (191), Expect = 9e-16
Identities = 36/51 (70%), Positives = 41/51 (80%)
Frame = +1
Query: 547 VGRSVDETLRLVKAFQFADKHGEVCPAGWNPDTNADTIKPNPKDSKEYFQK 699
VGRSVDETLRLV+AFQ+ DKHGEVCPAGW P DTI P+P K+YF+K
Sbjct: 1 VGRSVDETLRLVQAFQYTDKHGEVCPAGWKP--GKDTIIPDPTQKKKYFEK 49
>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 70.5 bits (165), Expect = 1e-12
Identities = 30/42 (71%), Positives = 35/42 (83%)
Frame = +3
Query: 129 KVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFT 254
++ KPAP + TAVVNGEF +LKLSDF GKY+V FFYPLDFT
Sbjct: 55 QISKPAPFWEGTAVVNGEFKELKLSDFEGKYLVFFFYPLDFT 96
Score = 60.9 bits (141), Expect = 1e-09
Identities = 26/54 (48%), Positives = 35/54 (64%)
Frame = +2
Query: 206 FHGKIRSSVLLSIGFHIVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAW 367
F GK + F VCPTE+IAFSD+ ++F I+ +V+G S DS F+HLAW
Sbjct: 81 FEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFRAINTEVVGCSVDSVFTHLAW 134
Score = 58.4 bits (135), Expect = 5e-09
Identities = 25/33 (75%), Positives = 30/33 (90%)
Frame = +1
Query: 511 GTLRHMSVNDLPVGRSVDETLRLVKAFQFADKH 609
G LR +++NDLPVGRSVDETLRLV+AFQ+ DKH
Sbjct: 143 GVLRQITMNDLPVGRSVDETLRLVQAFQYTDKH 175
>SB_45252| Best HMM Match : DIT1_PvcA (HMM E-Value=6.5e-07)
Length = 211
Score = 31.1 bits (67), Expect = 0.90
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 45 QLSRSVLSPAFKVAKRIN-FSTTSTTRAPKVQKPAPDFSATAVVNGEFNQLKLSDFTGK 218
QL++SVLS + + I TT PK +P + ATA++ + + L F GK
Sbjct: 17 QLAQSVLSKVMQFRRMIEECQDNCTTECPKCHRPHENKVATAIMQNKKIRFVLPGFPGK 75
>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1414
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 516 PASHVGERSARGPLRGRDAPPGQGLPVRRQARRGVPG 626
P+ +R P RGRDAPPG+G + RG PG
Sbjct: 788 PSRGFQDRDRGPPGRGRDAPPGRGQGYTNRG-RGQPG 823
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +3
Query: 525 HVGERSARGPLRGRDAPPGQGLPVRRQARRGVPGRLEPGHQRRHHQAEPQG 677
H ER P RGRD P + + R + G P R P Q R +P+G
Sbjct: 599 HRDERPEEFPRRGRDEP--EFVRPRGRDDGGRPSREPPRDQHRRPYDDPEG 647
>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = +3
Query: 552 PLRGRDAPPGQGLPVRRQARRGVPGRLEPGHQRR 653
P+RGR AP G+G P R RG P PG RR
Sbjct: 83 PMRGRGAPYGRGGPPSRGPPRGPP---LPGPPRR 113
>SB_58829| Best HMM Match : HC2 (HMM E-Value=5.8)
Length = 959
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -2
Query: 620 HTSPCLSANWKALTRRSVSST---ERPTGRSFTDM*RRVPYGRL*TNLLMQTHHRVIHHN 450
H + C +A K L +T + + T + ++ + + T LL Q HH H
Sbjct: 755 HHNQCHTALLKQLHHNQCHTTLLKQVHHNQCHTTLLKQAHHNQCHTTLLKQAHHNKCHTT 814
Query: 449 LLKSVFCNQ 423
LLK V NQ
Sbjct: 815 LLKQVHHNQ 823
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 533 TDM*RRVPYGRL*TNLLMQTHHRVIHHNLLKSVFCNQ 423
T + R+ + + T LL Q HH H LLK + NQ
Sbjct: 566 TTLLRKADHNQCHTTLLKQAHHNQCHTALLKQLHHNQ 602
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 533 TDM*RRVPYGRL*TNLLMQTHHRVIHHNLLKSVFCNQ 423
T + +++ + + T LL Q HH H LLK V NQ
Sbjct: 592 TALLKQLHHNQCQTTLLKQVHHNQCHTTLLKQVHHNQ 628
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 533 TDM*RRVPYGRL*TNLLMQTHHRVIHHNLLKSVFCNQ 423
T + ++V + + T LL Q HH H LLK NQ
Sbjct: 826 TTLLKQVHHNQCHTTLLKQVHHHQCHTTLLKQAHHNQ 862
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 533 TDM*RRVPYGRL*TNLLMQTHHRVIHHNLLKSVFCNQ 423
T + ++V + + T LL Q HH H LLK + NQ
Sbjct: 670 TTLLKQVHHNQCHTTLLKQAHHNQCHTALLKQLHHNQ 706
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 533 TDM*RRVPYGRL*TNLLMQTHHRVIHHNLLKSVFCNQ 423
T + ++V + + T LL Q HH H LLK V +Q
Sbjct: 813 TTLLKQVHHNQCQTTLLKQVHHNQCHTTLLKQVHHHQ 849
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 533 TDM*RRVPYGRL*TNLLMQTHHRVIHHNLLKSVFCNQ 423
T + ++V + + T LL Q HH H LLK + NQ
Sbjct: 839 TTLLKQVHHHQCHTTLLKQAHHNQCHTTLLKQLHHNQ 875
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 533 TDM*RRVPYGRL*TNLLMQTHHRVIHHNLLKSVFCNQ 423
T + R + + T LL Q HH H LLK + NQ
Sbjct: 631 TTLLREADHNQCHTTLLKQAHHNQCHTALLKQLHHNQ 667
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 533 TDM*RRVPYGRL*TNLLMQTHHRVIHHNLLKSVFCNQ 423
T + R + + T LL Q HH H LLK + NQ
Sbjct: 735 TTLLREADHNQCHTTLLKQAHHNQCHTALLKQLHHNQ 771
>SB_55365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/44 (40%), Positives = 19/44 (43%)
Frame = +3
Query: 513 HPASHVGERSARGPLRGRDAPPGQGLPVRRQARRGVPGRLEPGH 644
HP S R PL GR APP P+R R V R GH
Sbjct: 30 HPTSISHVRFQAKPLHGRQAPP----PIRIAVRARVKERKRCGH 69
>SB_43985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 461 IHHNLLKSVFCNQQAEEFPFFPIHRPS*EC*SMRGD 354
+ + V CN+ + PF H S C S+RGD
Sbjct: 74 VDSKICSKVLCNRLVDILPFLDFHLSSSICLSVRGD 109
>SB_32482| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 524
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +3
Query: 204 DFTGKYVVLFFYPLDFTLYVRQSS*RSVIKLKTLLESIVR*LECPQTLSSVTSHGSTLLG 383
+F GK V L P ++ RQ LL+ + EC + S +S G+T LG
Sbjct: 444 EFPGKVVTLDMVPEHIGIFQRQRQPSVEGMYGVLLDHFLL-SECHYLILSSSSFGTTALG 502
Query: 384 RT 389
RT
Sbjct: 503 RT 504
>SB_22242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -3
Query: 367 PCEVTELRVCGHSNHLTIDSSKVFSFITERYELCRTYNVKSNG*KNRTTYFPVKSESL-S 191
PC + E VC H H +++S + F+ C N + +G + + YFPV + S+ +
Sbjct: 566 PCYICESCVCSHCLH-KVETSSSYVFMENE---CT--NKRDSGFCDSSPYFPVCASSMPN 619
Query: 190 *LNSPLTT 167
+SP T
Sbjct: 620 SFSSPALT 627
>SB_50986| Best HMM Match : UDPG_MGDP_dh (HMM E-Value=0)
Length = 354
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +2
Query: 236 LSIGFHIVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAWINTP 379
+SI F +V E + D DF D VIG +D F + + P
Sbjct: 56 MSIKFDVVSNPEFLKEGDAINDFMKPDRVVIGAESDYAFDKMRQLYAP 103
>SB_23043| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 441
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 345 LSSVTSHGSTLLGRTVDWEKWKFL 416
L SVT H ++LL T+ WE+++ L
Sbjct: 294 LLSVTYHANSLLVATISWERFEIL 317
>SB_8943| Best HMM Match : LTXXQ (HMM E-Value=0.45)
Length = 415
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 345 LSSVTSHGSTLLGRTVDWEKWKFL 416
L SVT H ++LL T+ WE+++ L
Sbjct: 294 LLSVTYHANSLLVATISWERFEIL 317
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,845,925
Number of Sequences: 59808
Number of extensions: 457516
Number of successful extensions: 1591
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1585
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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