Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10606
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin ...   120   8e-28
Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical pr...   116   2e-26
AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical...    31   0.60 
Z70035-4|CAA93864.2|  410|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z49069-2|CAA88865.1|  333|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen prot...    29   3.2  
U88165-8|AAK21391.1|  581|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical ...    28   5.6  
U58755-13|AAB00702.1|  348|Caenorhabditis elegans Collagen prote...    28   7.4  
Z93778-5|CAB07844.2|  336|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin
           protein 2 protein.
          Length = 195

 Score =  120 bits (290), Expect = 8e-28
 Identities = 59/101 (58%), Positives = 71/101 (70%), Gaps = 1/101 (0%)
 Frame = +2

Query: 206 FHGKIRSSVLLSIGFHIVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAWINTPRK 385
           + GK        + F  VCPTE+IAFSD+A++F  I+  V+  STDS FSHLAWIN PRK
Sbjct: 31  YKGKYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKAINTVVLAASTDSVFSHLAWINQPRK 90

Query: 386 DGGLGKMEIPLLADYKKQISKDYDVLL-DDGFALRGLFIID 505
            GGLG+M IP+LAD   QIS+DY VL  D+G A RGLFIID
Sbjct: 91  HGGLGEMNIPVLADTNHQISRDYGVLKEDEGIAFRGLFIID 131



 Score =  101 bits (241), Expect = 7e-22
 Identities = 45/65 (69%), Positives = 54/65 (83%)
 Frame = +1

Query: 505 PYGTLRHMSVNDLPVGRSVDETLRLVKAFQFADKHGEVCPAGWNPDTNADTIKPNPKDSK 684
           P   LR +++NDLPVGRSVDETLRLV+AFQF +KHGEVCPAGW P   +DTIKP  K+S+
Sbjct: 132 PSQNLRQITINDLPVGRSVDETLRLVQAFQFVEKHGEVCPAGWTP--GSDTIKPGVKESQ 189

Query: 685 EYFQK 699
           EYF+K
Sbjct: 190 EYFKK 194



 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 28/41 (68%), Positives = 32/41 (78%)
 Frame = +3

Query: 132 VQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFT 254
           + KPAP F   AVV+GEF  + LSD+ GKYVVLFFYPLDFT
Sbjct: 6   IGKPAPQFKTQAVVDGEFVDVSLSDYKGKYVVLFFYPLDFT 46


>Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical
           protein R07E5.2 protein.
          Length = 226

 Score =  116 bits (279), Expect = 2e-26
 Identities = 56/114 (49%), Positives = 74/114 (64%), Gaps = 1/114 (0%)
 Frame = +2

Query: 206 FHGKIRSSVLLSIGFHIVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAWINTPRK 385
           + GK        + F  VCPTE+IA+ D+A +F  +  +V+  S DS FSHLAW+NTPRK
Sbjct: 60  YKGKWLVMFFYPLDFTFVCPTEIIAYGDRANEFRSLGAEVVACSCDSHFSHLAWVNTPRK 119

Query: 386 DGGLGKMEIPLLADYKKQISKDYDVL-LDDGFALRGLFIIDRMAPCVTCR*TIC 544
           DGGLG M+IPLLAD+ K+I+  + VL  + G + RGLF+ID   P  T R T C
Sbjct: 120 DGGLGDMDIPLLADFNKKIADSFGVLDKESGLSYRGLFLID---PSGTVRHTTC 170



 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 45/65 (69%), Positives = 52/65 (80%)
 Frame = +1

Query: 505 PYGTLRHMSVNDLPVGRSVDETLRLVKAFQFADKHGEVCPAGWNPDTNADTIKPNPKDSK 684
           P GT+RH + NDLPVGRSVDETLR++KAFQF+DKHGEVCPA W+ D  + TIKP    SK
Sbjct: 161 PSGTVRHTTCNDLPVGRSVDETLRVLKAFQFSDKHGEVCPADWHED--SPTIKPGVATSK 218

Query: 685 EYFQK 699
           EYF K
Sbjct: 219 EYFNK 223



 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 29/75 (38%), Positives = 41/75 (54%)
 Frame = +3

Query: 30  SFIVKQLSRSVLSPAFKVAKRINFSTTSTTRAPKVQKPAPDFSATAVVNGEFNQLKLSDF 209
           S  V+ L R+V + A +         +     PK   PA  F  TAVV+G+F  +   D+
Sbjct: 3   SSAVRALCRTVPTVATRQLSTSRALLSLRPLGPKNTVPA--FKGTAVVDGDFKVISDQDY 60

Query: 210 TGKYVVLFFYPLDFT 254
            GK++V+FFYPLDFT
Sbjct: 61  KGKWLVMFFYPLDFT 75


>AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.11 protein.
          Length = 231

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
 Frame = +2

Query: 248 FHIVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAW---INTPRKDGGLGK-MEIP 415
           F  VC TEL      A +F     Q++ +S DS  +H  W   IN+  +    G  +   
Sbjct: 40  FTPVCTTELAELVKLAPEFRKRHVQILAISIDSSETHRDWAKDINSVAQLSNCGSHLPFE 99

Query: 416 LLADYKKQISKDYDVLLDDGFALRGLFIIDR 508
           ++AD  + I  +  ++  D     G+ +  R
Sbjct: 100 IIADTDRSICTELGMIDPDEMNSEGICLSAR 130


>Z70035-4|CAA93864.2|  410|Caenorhabditis elegans Hypothetical
           protein R09D1.4 protein.
          Length = 410

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +3

Query: 9   LLTHAKMSFIVKQLSRSVLSPAFKVAKRINFSTTSTTRAPKVQKPAPDFSATAVVNGEFN 188
           + T +  S   K+L+ + ++PA         S TSTT++PK+    P F    +V G F 
Sbjct: 45  IATGSASSTRFKKLTTTTINPATSATTGNTSSATSTTKSPKIATKTP-FCKKRIV-GFFT 102

Query: 189 QLKLSDFT 212
             + ++ T
Sbjct: 103 DTQSTEIT 110


>Z49069-2|CAA88865.1|  333|Caenorhabditis elegans Hypothetical
           protein K12D12.3 protein.
          Length = 333

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = +3

Query: 525 HVGERSARGPLRGRDAPPGQGLPVRRQARRGVPGRLEPGHQRRHHQAEPQGQ 680
           H GE  A GP +G+  P G      RQ  +G  GR   G      Q  PQG+
Sbjct: 209 HPGEMGAPGP-QGKQGPDG------RQGEKGADGRKPIGRPGPKGQRGPQGE 253


>AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen protein
           48 protein.
          Length = 285

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
 Frame = +3

Query: 516 PASHVGERSARGP-------LRGRDAPPGQGLPVRRQARRGVPGRL-EPGHQRRHHQAEP 671
           P    G+   RGP       L G DAPPG   P  R    G PG+   PG    +  A  
Sbjct: 183 PPGQPGQPGQRGPPGEPGALLPGGDAPPGPSGPPGRPGAPGQPGKAGSPGQDGSNGDAGV 242

Query: 672 QGQ 680
            G+
Sbjct: 243 AGE 245


>U88165-8|AAK21391.1|  581|Caenorhabditis elegans Hypothetical
           protein F54C1.1 protein.
          Length = 581

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 326 IGVSTDSEFSHLAWINTPRKDGGLGKMEIP 415
           +G   D   +++ WI T   D G G+M+IP
Sbjct: 37  VGEQLDENGNNITWIQTYLYDFGFGEMQIP 66


>AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical
           protein F54A3.6 protein.
          Length = 470

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
 Frame = +3

Query: 516 PASHVGER----SARGPLRGRDAPPGQGLPVRRQARRGVPGR 629
           P  H G R    S R P R    PP Q  P R ++   +PGR
Sbjct: 131 PRYHSGPREDRFSDRNPPREHSPPPPQRFPARERSPAYIPGR 172


>U58755-13|AAB00702.1|  348|Caenorhabditis elegans Collagen protein
           113 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
 Frame = +3

Query: 516 PASHVGERSARGPLRGRDAPPGQGLPVRRQARRGVPGRL----EPGHQRRHHQAEPQGQ 680
           P    G     GP  G + PPG    +    R G PG+     EPG   +  +A P G+
Sbjct: 156 PRGPTGPPGETGP-SGPEGPPGNPGRIGEHGREGYPGQQGIPGEPGKPGKLGEAGPNGR 213


>Z93778-5|CAB07844.2|  336|Caenorhabditis elegans Hypothetical
           protein C31H5.1 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -3

Query: 106 VEKLILFATLKAGDSTLRLSCFTMND 29
           VEKLIL    + G+S L+L+C T++D
Sbjct: 124 VEKLILLGHSRGGESALQLAC-TLSD 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,043,696
Number of Sequences: 27780
Number of extensions: 346641
Number of successful extensions: 1090
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)