Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10606
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.5  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    22   6.5  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 393 DWEKWKFLCLLITKNRFQKIMMYYSMMGLH 482
           DW  WKF  L+   + F  +  +  ++ LH
Sbjct: 861 DWRHWKFPNLVEVLDEFPSVRPFAPLLLLH 890


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +3

Query: 264  RQSS*RSVIKLKTLLESIVR*LECPQTLSSVTSHGSTLLGRTV 392
            +QS  + V+  KTLL S ++ +   Q  S +T HG  L G+T+
Sbjct: 1007 QQSPQQHVLPGKTLLASQIKLVSPGQIKSLLTGHG--LQGQTI 1047


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +3

Query: 573 PPGQGLPVRRQARRGVPGRLEPGHQRRHHQAEPQGQ 680
           PP Q L   +        + +P  Q++  Q +PQ Q
Sbjct: 809 PPHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQ 844


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +2

Query: 299 DFAGIDCQVIGVSTDSEFSHLAWINTPRKD-GGLGKMEIPLLADYKKQISKDYDVLLDDG 475
           DF   DC++   +    ++   W NT   D  GLG  EIP      ++I  D   +  DG
Sbjct: 751 DFDACDCEMTCPAGCKCYNDRTW-NTNAVDCSGLGVEEIP------RRIPMDATEVYLDG 803

Query: 476 FALRGL 493
             LR L
Sbjct: 804 NVLREL 809



 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = +2

Query: 254 IVCPTELIAFSDKAKDFAGIDCQVIGV 334
           + CP     ++D+  +   +DC  +GV
Sbjct: 759 MTCPAGCKCYNDRTWNTNAVDCSGLGV 785


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 330 ECPQTLSSVTSHGSTL 377
           +CPQT S ++S  STL
Sbjct: 691 QCPQTASLLSSTHSTL 706


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 121 ELLKFRSLLQTSVRQQLSMESSINLNF 201
           EL K R LLQ ++  QL       LNF
Sbjct: 58  ELQKLRLLLQGNINNQLFQTPCELLNF 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,057
Number of Sequences: 438
Number of extensions: 3706
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)