Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10606
(702 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putat... 109 1e-24
At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)... 109 1e-24
At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putati... 38 0.005
At5g45170.1 68418.m05545 CbbY protein-related low similarity to ... 31 0.74
At3g26060.1 68416.m03245 peroxiredoxin Q, putative similar to pe... 30 1.3
At5g02180.1 68418.m00139 amino acid transporter family protein b... 29 2.3
At2g29970.1 68415.m03645 heat shock protein-related contains sim... 29 3.9
At5g52470.1 68418.m06510 fibrillarin 1 (FBR1) (FIB1) (SKIP7) ide... 28 6.9
At5g07870.1 68418.m00906 transferase family protein similar to a... 28 6.9
At1g20400.1 68414.m02544 myosin heavy chain-related 28 6.9
At1g58227.1 68414.m06616 hypothetical protein 27 9.1
At1g50830.1 68414.m05716 hypothetical protein 27 9.1
At1g07970.1 68414.m00868 expressed protein 27 9.1
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 27 9.1
>At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putative
very strong similarity to SP|Q96291 2-cys peroxiredoxin
BAS1, chloroplast precursor {Arabidopsis thaliana};
contains Pfam profile: PF00578 AhpC/TSA (alkyl
hydroperoxide reductase and thiol-specific antioxidant)
family
Length = 273
Score = 109 bits (263), Expect = 1e-24
Identities = 50/90 (55%), Positives = 66/90 (73%), Gaps = 1/90 (1%)
Frame = +2
Query: 242 IGFHIVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAWINTPRKDGGLGKMEIPLL 421
+ F VCPTE+ AFSD+ ++F ++ +V+GVS DS FSHLAW+ T RK GGLG + PL+
Sbjct: 120 LDFTFVCPTEITAFSDRYEEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLV 179
Query: 422 ADYKKQISKDYDVLL-DDGFALRGLFIIDR 508
+D K ISK + VL+ D G ALRGLFIID+
Sbjct: 180 SDITKSISKSFGVLIPDQGIALRGLFIIDK 209
Score = 70.5 bits (165), Expect = 1e-12
Identities = 31/62 (50%), Positives = 46/62 (74%), Gaps = 1/62 (1%)
Frame = +1
Query: 511 GTLRHMSVNDLPVGRSVDETLRLVKAFQFADKH-GEVCPAGWNPDTNADTIKPNPKDSKE 687
G ++H ++N+L +GRSVDET+R ++A Q+ ++ EVCPAGW P ++KP+PK SKE
Sbjct: 211 GVIQHSTINNLGIGRSVDETMRTLQALQYVQENPDEVCPAGWKP--GEKSMKPDPKLSKE 268
Query: 688 YF 693
YF
Sbjct: 269 YF 270
Score = 58.0 bits (134), Expect = 6e-09
Identities = 31/59 (52%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Frame = +3
Query: 84 AKRINFSTTSTTR-APKVQKPAPDFSATAVVNGEFNQLKLSDFTG-KYVVLFFYPLDFT 254
A R NF+ + P V APDF A AV + EF ++KLS++ G KYV+LFFYPLDFT
Sbjct: 65 ASRRNFAVKAQADDLPLVGNKAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFT 123
>At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)
identical to SP|Q96291 2-cys peroxiredoxin BAS1,
chloroplast precursor {Arabidopsis thaliana}; contains
Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide
reductase and thiol-specific antioxidant) family
Length = 266
Score = 109 bits (263), Expect = 1e-24
Identities = 50/90 (55%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
Frame = +2
Query: 242 IGFHIVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAWINTPRKDGGLGKMEIPLL 421
+ F VCPTE+ AFSD+ +F ++ +V+GVS DS FSHLAW+ T RK GGLG + PL+
Sbjct: 113 LDFTFVCPTEITAFSDRHSEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLI 172
Query: 422 ADYKKQISKDYDVLL-DDGFALRGLFIIDR 508
+D K ISK + VL+ D G ALRGLFIID+
Sbjct: 173 SDVTKSISKSFGVLIHDQGIALRGLFIIDK 202
Score = 70.1 bits (164), Expect = 1e-12
Identities = 31/62 (50%), Positives = 46/62 (74%), Gaps = 1/62 (1%)
Frame = +1
Query: 511 GTLRHMSVNDLPVGRSVDETLRLVKAFQFADKH-GEVCPAGWNPDTNADTIKPNPKDSKE 687
G ++H ++N+L +GRSVDET+R ++A Q+ ++ EVCPAGW P ++KP+PK SKE
Sbjct: 204 GVIQHSTINNLGIGRSVDETMRTLQALQYIQENPDEVCPAGWKP--GEKSMKPDPKLSKE 261
Query: 688 YF 693
YF
Sbjct: 262 YF 263
Score = 58.8 bits (136), Expect = 3e-09
Identities = 42/96 (43%), Positives = 57/96 (59%), Gaps = 12/96 (12%)
Frame = +3
Query: 3 KSLLTHAKMSFIVKQLSRSVLSPAFK--VAKRINFSTTS----TTRA-----PKVQKPAP 149
KS L+ +SF+ + LS S + + A+R + S+TS +A P V AP
Sbjct: 22 KSSLSSPSVSFL-RTLSSPSASASLRSGFARRSSLSSTSRRSFAVKAQADDLPLVGNKAP 80
Query: 150 DFSATAVVNGEFNQLKLSDFTG-KYVVLFFYPLDFT 254
DF A AV + EF ++KLSD+ G KYV+LFFYPLDFT
Sbjct: 81 DFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFT 116
>At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putative
identical to peroxiredoxin (Rehydrin homolog)
[Arabidopsis thaliana] SWISS-PROT:O04005; contains Pfam
profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase
and thiol-specific antioxidant) family
Length = 216
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +2
Query: 248 FHIVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAWINTPRKDGGLGKMEIPLLAD 427
F VC TEL A + A +F +++G+S D SH WI K+ P++AD
Sbjct: 42 FTPVCTTELGAMAKYAHEFDKRGVKLLGLSCDDVQSHKDWIKDIEAFNHGSKVNYPIIAD 101
Query: 428 YKKQI 442
K+I
Sbjct: 102 PNKEI 106
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +1
Query: 550 GRSVDETLRLVKAFQFADKHGE--VCPAGWNPD 642
GR++DE LR + + A KH P W PD
Sbjct: 144 GRNMDEVLRALDSLLMASKHNNKIATPVNWKPD 176
>At5g45170.1 68418.m05545 CbbY protein-related low similarity to
SP|P40119 CbbY protein, chromosomal {Alcaligenes
eutrophus}
Length = 372
Score = 31.1 bits (67), Expect = 0.74
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 170 NCCRTEVWSRLLNFRSSCSAGRRKINPFCYFESRRQ 63
+C +T ++++ L+ RSS GRR PF F + Q
Sbjct: 15 SCTKTSIFTQYLSERSSHDTGRRNFLPFSNFPGKSQ 50
>At3g26060.1 68416.m03245 peroxiredoxin Q, putative similar to
peroxiredoxin Q [Sedum lineare] GI:6899842; contains
Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide
reductase and thiol-specific antioxidant) family
Length = 216
Score = 30.3 bits (65), Expect = 1.3
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 KSLLTHAKMSFIVKQLSRSVLSPAFKVAKRINFSTTSTTRA---PKVQK--PAPDFSATA 167
K+L+T + S K + + I+ ++S+ + KV K APDF+
Sbjct: 23 KTLVTKTQFSVPTKSSESNFFGSTLTHSSYISPVSSSSLKGLIFAKVNKGQAAPDFTLKD 82
Query: 168 VVNGEFNQLKLSDFTGKYVVLFFYPLDFT 254
NG+ + L + GK VVL+FYP D T
Sbjct: 83 Q-NGK--PVSLKKYKGKPVVLYFYPADET 108
>At5g02180.1 68418.m00139 amino acid transporter family protein
belongs to INTERPRO:IPR002422 amino acid/polyamine
transporter, family II
Length = 550
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +3
Query: 12 LTHAKMSFIVKQLSRSVLSPAFKVAKRINF--STTSTTRAPKVQKPAPDFSATAVVNGEF 185
+T +SF+ + SR + S +F+ ++ +F S +S++ P + +P PD T +
Sbjct: 83 MTPPSVSFMPQSSSRRLAS-SFQKKQQSSFCDSLSSSSSKPLLSQPVPDKEETILPVNPQ 141
Query: 186 NQLKLS 203
+QLKLS
Sbjct: 142 SQLKLS 147
>At2g29970.1 68415.m03645 heat shock protein-related contains
similarity to 101 kDa heat shock protein; HSP101
[Triticum aestivum] gi|11561808|gb|AAC83689
Length = 1002
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 475 VCIKRFVHNRPYGTLRHMSVNDLPVGRSVD 564
VCI R HN PY + +L VG S+D
Sbjct: 55 VCISRAAHNTPYSSRLQFRALELCVGVSLD 84
>At5g52470.1 68418.m06510 fibrillarin 1 (FBR1) (FIB1) (SKIP7)
identical to fibrillarin 1 GI:9965653 from [Arabidopsis
thaliana]; C-terminus identical to SKP1 interacting
partner 7 GI:10716959 from [Arabidopsis thaliana];
contains Pfam domain PF01269: Fibrillarin
Length = 308
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 531 GERSARGPL-RGRDAPPGQGLPVRRQARRGVPGRLEP 638
G+R GP RGR AP G+G P R + G +EP
Sbjct: 37 GDRGRSGPRGRGRGAPRGRGGPPRGGMKGGSKVIVEP 73
>At5g07870.1 68418.m00906 transferase family protein similar to
anthranilate N-hydroxycinnamoyl/benzoyltransferase,
Dianthus caryophyllus [gi:2239091]; contains Pfam
transferase family domain PF002458
Length = 464
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +1
Query: 85 QKGLIFLRPALQELLKFRSLLQTSVRQ 165
QKGL+FL+P+ E +K + ++T +++
Sbjct: 45 QKGLLFLKPSFSESVKPKEFMETLLQK 71
>At1g20400.1 68414.m02544 myosin heavy chain-related
Length = 944
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +1
Query: 493 VHNRPYGTLRHMSVNDLPVGRS-----VDETLRLVKAFQF 597
++ RPY +R +S D PV S VD T L++A F
Sbjct: 102 IYTRPYSRVRKISETDAPVASSFSMQRVDPTCLLIRALGF 141
>At1g58227.1 68414.m06616 hypothetical protein
Length = 1323
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = +2
Query: 311 IDCQVIGVSTDSEFSHLAWINTPRKDGGLGKMEIPLLADYKKQISKDYDVLLDDGFALRG 490
+D + V EF AW+ M++ ++ DY+ ++ D+ L++ +RG
Sbjct: 1128 LDSNPMNVEALMEFGWSAWLTA--------SMKLDVIKDYRSELLNHDDLALNEQHFVRG 1179
Query: 491 LFII 502
LF +
Sbjct: 1180 LFCV 1183
>At1g50830.1 68414.m05716 hypothetical protein
Length = 768
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = +2
Query: 242 IGFHIVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAWINTPRKDGG 394
+G + P E D K + Q + STD S +W++T GG
Sbjct: 157 LGSPVFAPLETSETRDSVKKLENVRIQHMNSSTDRRVSQKSWVSTFLGRGG 207
>At1g07970.1 68414.m00868 expressed protein
Length = 693
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 516 PASHVGERSARGPLRGRDAPPGQGLPVRRQA-RRGVPGRLEPG 641
P+S+ G ++++ PL PP + P + A GVP L PG
Sbjct: 578 PSSYTGTQASKNPLFLGVLPPKERFPEKYIAVVSGVPSTLHPG 620
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory / CAF
identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 377 PRKDGGLGKMEIPLLADYKKQ 439
PRK+G LG +E ADY KQ
Sbjct: 1241 PRKEGYLGPLEYNTYADYYKQ 1261
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,074,967
Number of Sequences: 28952
Number of extensions: 314182
Number of successful extensions: 938
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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