Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10603
         (419 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0140 + 12255418-12255512,12257514-12257793                      106   6e-24
08_02_1181 - 24985963-24986242,24987109-24987197                      105   1e-23
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649     90   8e-19
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602...    27   6.1  
01_01_1216 - 9827190-9827531                                           27   6.1  

>06_02_0140 + 12255418-12255512,12257514-12257793
          Length = 124

 Score =  106 bits (255), Expect = 6e-24
 Identities = 46/64 (71%), Positives = 55/64 (85%)
 Frame = +1

Query: 64  IVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRN 243
           +VTREYT+NLHKRLHG  FKK+AP AIKEIRKFA+K MGT D+RVD +LNK +WS G+R+
Sbjct: 16  VVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVKLNKHIWSSGIRS 75

Query: 244 VPFR 255
           VP R
Sbjct: 76  VPRR 79



 Score = 30.3 bits (65), Expect = 0.66
 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = +3

Query: 282 NDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 374
           ND+ED+  +L++LVT   VP   +KGL T+ V+
Sbjct: 89  NDEEDAKEELYSLVTVAEVPQEGLKGLGTKLVE 121


>08_02_1181 - 24985963-24986242,24987109-24987197
          Length = 122

 Score =  105 bits (252), Expect = 1e-23
 Identities = 45/66 (68%), Positives = 55/66 (83%)
 Frame = +1

Query: 58  KRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGV 237
           + +VTREYT+NLHKRLH   FKK+AP AIKEIRKFA+K MGT D+RVD +LNK +WS G+
Sbjct: 12  EEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKLNKHIWSSGI 71

Query: 238 RNVPFR 255
           R+VP R
Sbjct: 72  RSVPRR 77



 Score = 31.9 bits (69), Expect = 0.22
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = +3

Query: 282 NDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 374
           ND+ED+  +L++LVT   VP   +KGL T+ VD
Sbjct: 87  NDEEDAKEELYSLVTVAEVPPEGLKGLGTKVVD 119


>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
          Length = 139

 Score = 89.8 bits (213), Expect = 8e-19
 Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 18/91 (19%)
 Frame = +1

Query: 37  KKRQISHKR--IVTREYTVNLHKRLHGV----------------GFKKRAPRAIKEIRKF 162
           KKR    ++  +VTREYT+NLHKRLHG                  FKK+AP AIKEIRKF
Sbjct: 4   KKRGAGTRKDEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKF 63

Query: 163 AEKQMGTPDIRVDTRLNKFLWSKGVRNVPFR 255
           A+K MGT DIR+D +LNK +W+ G+R+VP R
Sbjct: 64  AQKAMGTTDIRIDVKLNKAIWTNGIRSVPRR 94



 Score = 30.7 bits (66), Expect = 0.50
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = +3

Query: 282 NDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 374
           ND+ED+  +L++LVT   +P   +KGL T+ V+
Sbjct: 104 NDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVE 136


>01_06_0668 +
           31058497-31059510,31059609-31059676,31060189-31060270,
           31060339-31060431,31060516-31060668,31060900-31060968,
           31061091-31061184,31061594-31061677,31062133-31062221,
           31062340-31062456,31062567-31062707,31062823-31063005
          Length = 728

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 85  VNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPD 189
           +N+   ++G GF   A   + E+ K A KQ+  PD
Sbjct: 441 LNVDSAVYGAGFYASATPQLDELLKEASKQVQNPD 475


>01_01_1216 - 9827190-9827531
          Length = 113

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 121 KKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFR 255
           KK+  +  K+ +K    +  +P I +DTR+ K      + NV FR
Sbjct: 45  KKKKKKKKKKKKKKKHMKNASPCISMDTRIKKLAMRPIIGNVSFR 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,050,708
Number of Sequences: 37544
Number of extensions: 177913
Number of successful extensions: 345
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)