Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10603
         (419 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   6e-06
SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)                  37   0.006
SB_26661| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   3.6  
SB_12627| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 47.2 bits (107), Expect = 6e-06
 Identities = 20/32 (62%), Positives = 27/32 (84%)
 Frame = +3

Query: 282 NDDEDSAHKLFTLVTYVPVASIKGLQTENVDA 377
           N+DEDS HKL+TLVT V V++ KGLQT+ V++
Sbjct: 816 NEDEDSPHKLYTLVTSVAVSTFKGLQTQKVES 847



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = +1

Query: 37  KKRQISHKRIVTREYTVNLHKRLHGVGFKKR 129
           KK + +   +VTREYT+NLHKR+HG+    R
Sbjct: 776 KKGRSAINEVVTREYTINLHKRIHGMNVPYR 806


>SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)
          Length = 776

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = +3

Query: 282 NDDEDSAHKLFTLVTYVPVASIKGLQTE 365
           N+DEDS HKL+TLVT V V++ K L  E
Sbjct: 16  NEDEDSPHKLYTLVTSVAVSTFKVLADE 43


>SB_26661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 10/15 (66%), Positives = 14/15 (93%), Gaps = 1/15 (6%)
 Frame = -3

Query: 291 HHHYVFVK-ASHGPE 250
           HHHYVF++ A+HGP+
Sbjct: 143 HHHYVFIQSANHGPK 157


>SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 927

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 236 TPLDQRNLFKRVSTRMSGVPICFSANF 156
           TP D  N   R  T M G+P+C +A F
Sbjct: 285 TPEDTPNDSLRTKTVMFGIPVCMTARF 311


>SB_12627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 444

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 266 PHTDRKGTFLTPLDQRNLFKRVSTRMSGVPI 174
           P  D+K T  +P+D R+L       MSGVPI
Sbjct: 319 PRCDKKSTEGSPIDNRDL-SNSRRLMSGVPI 348


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,916,484
Number of Sequences: 59808
Number of extensions: 227374
Number of successful extensions: 411
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)