Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10603
(419 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B) ribo... 105 9e-24
At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C) 103 5e-23
At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A) 100 3e-22
At3g19400.2 68416.m02460 cysteine proteinase, putative non-conse... 32 0.18
At3g19400.1 68416.m02461 cysteine proteinase, putative non-conse... 32 0.18
At4g17250.1 68417.m02594 expressed protein 28 2.2
At5g37080.1 68418.m04451 hypothetical protein includes At5g37080... 27 5.2
>At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B)
ribosomal protein L31, Nicotiana glutinosa, U23784
Length = 119
Score = 105 bits (253), Expect = 9e-24
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = +1
Query: 58 KRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGV 237
+ +VTREYT+NLH+RLH FKK+AP+AIKEIRKFAEK+MGT D+RVD +LNK +WSKG+
Sbjct: 9 EEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLNKQIWSKGI 68
Query: 238 RNVPFR 255
R P R
Sbjct: 69 RGPPRR 74
Score = 29.5 bits (63), Expect = 0.97
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 282 NDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 374
NDDED+ + F+LVT +P + GL T+ ++
Sbjct: 84 NDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIE 116
>At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)
Length = 119
Score = 103 bits (247), Expect = 5e-23
Identities = 44/66 (66%), Positives = 55/66 (83%)
Frame = +1
Query: 58 KRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGV 237
+ ++TREYT+NLH+RLH FKK+AP+AIKEIRKFAEK MGT D+RVD +LNK +WSKG+
Sbjct: 9 EEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSKGI 68
Query: 238 RNVPFR 255
R P R
Sbjct: 69 RGPPRR 74
Score = 29.5 bits (63), Expect = 0.97
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 282 NDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 374
NDDED+ + F+LVT +P + GL T+ ++
Sbjct: 84 NDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIE 116
>At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)
Length = 119
Score = 100 bits (240), Expect = 3e-22
Identities = 44/66 (66%), Positives = 53/66 (80%)
Frame = +1
Query: 58 KRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGV 237
+ +VTREYT+NLH+RLH FKK+AP AIKEIRKFA K MGT D+RVD +LNK +WSKG+
Sbjct: 9 EEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNKQIWSKGI 68
Query: 238 RNVPFR 255
R P R
Sbjct: 69 RGPPRR 74
Score = 29.5 bits (63), Expect = 0.97
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 282 NDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 374
NDDED+ + F+LVT +P + GL T+ ++
Sbjct: 84 NDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIE 116
>At3g19400.2 68416.m02460 cysteine proteinase, putative
non-consensus AT acceptor site at exon 3; contains
similarity to cysteine protease CYP1 GI:2828252, TDI-65
GI:5726641 from [Lycopersicon esculentum]
Length = 290
Score = 31.9 bits (69), Expect = 0.18
Identities = 18/74 (24%), Positives = 36/74 (48%)
Frame = +1
Query: 40 KRQISHKRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKF 219
+R + R++ ++ V K +G+G K+R + K+ KF ++ PD + L +F
Sbjct: 34 ERNETEVRLMYEQWLVENRKNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRF 93
Query: 220 LWSKGVRNVPFRSV 261
+ N FR++
Sbjct: 94 ---ADLTNEEFRAI 104
>At3g19400.1 68416.m02461 cysteine proteinase, putative
non-consensus AT acceptor site at exon 3; contains
similarity to cysteine protease CYP1 GI:2828252, TDI-65
GI:5726641 from [Lycopersicon esculentum]
Length = 362
Score = 31.9 bits (69), Expect = 0.18
Identities = 18/74 (24%), Positives = 36/74 (48%)
Frame = +1
Query: 40 KRQISHKRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKF 219
+R + R++ ++ V K +G+G K+R + K+ KF ++ PD + L +F
Sbjct: 34 ERNETEVRLMYEQWLVENRKNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRF 93
Query: 220 LWSKGVRNVPFRSV 261
+ N FR++
Sbjct: 94 ---ADLTNEEFRAI 104
>At4g17250.1 68417.m02594 expressed protein
Length = 416
Score = 28.3 bits (60), Expect = 2.2
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 82 TVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVD 201
TV KR + +KKR A+K+ + E++ G P ++ D
Sbjct: 169 TVPATKRFLELKYKKRYEFALKQCPSYTERRRGVPKLKED 208
>At5g37080.1 68418.m04451 hypothetical protein includes At5g37080,
At5g37170, At2g05090
Length = 566
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 90 FTQTTSWCWI*KACPKSNQRNPKVR*KTDGNSGHSSRHPLK 212
F T W W CPK N++ V+ T ++G + P+K
Sbjct: 295 FAIDTDWGWFYFGCPKCNRKTELVKEST--STGKMVKTPMK 333
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,368,007
Number of Sequences: 28952
Number of extensions: 153090
Number of successful extensions: 319
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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