Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10600
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   0.60 
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    27   1.8  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    26   2.4  
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch...    26   2.4  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   5.6  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    25   7.4  
SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1...    24   9.8  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    24   9.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 0.60
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
 Frame = +2

Query: 104 ERQCSRQEVVAHYSARALDDAMREQMAREWATREREASSSGG-GVLRAELANLNASFGRR 280
           E+    ++V         ++ +  + A+  A RER A  SGG G+    L  L A  GR+
Sbjct: 397 EKDDENKDVEEEQEQEQEEEQIDPEEAKRIALRERMAKMSGGIGMHVFGLPGLAAPIGRK 456

Query: 281 GWRR---ASFASLKKSATSSNWPP 343
              R   A  +   KS T+ + PP
Sbjct: 457 NTLRRTPAKSSEEAKSTTNDSSPP 480


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +2

Query: 26  RTMLEFQE-LMTVFQLLHWNGSLRAMRERQCSRQEVVAHYSARALDDAMREQMAREWATR 202
           +T ++F E L+    L   NG+LR    R  S + +    ++ ALDD+       +W T 
Sbjct: 97  KTQVDFTEQLIPKKSLNKLNGTLRETMSRMPSFESISLSETSNALDDSCFND---DWITI 153

Query: 203 EREAS 217
           E E S
Sbjct: 154 ESEFS 158


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 110 QCSRQEVVAHYSARALDDAMREQMAREWATRER 208
           Q   Q+ + H  A  LDDA  ++ ARE  TRER
Sbjct: 177 QSGTQDFIGHAMALYLDDAYLKKPARE--TRER 207


>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 272

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 164 AMREQMAREWATREREASSSGGGVLRAELANLNASFGRRGWRRASFASLKKSATS 328
           A R      WA R    SSS G   R+ +++ ++S    G  R++  S+  S ++
Sbjct: 81  ARRNNHVGRWANRHSNVSSSSGSRGRSSVSSRDSSPSYSGALRSAERSISSSPST 135


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -2

Query: 133 YDFLPRALPLAHRSQRPVPVEQLEYR-HQLLEFQHRPTF-VRF 11
           YD+LP       +    + +EQ  +R H L+   HRPTF VR+
Sbjct: 182 YDYLPP------KKVSDILIEQFFFRCHMLINVLHRPTFYVRY 218


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -3

Query: 327 DVALFFREAKLARRQPRRPKLA-FRFASSARSTPP--PDE 217
           D    FRE ++ R+QP + KL  F+    +++  P  PDE
Sbjct: 345 DFEKLFREFQILRKQPMQDKLLNFKKLCKSKTVDPKNPDE 384


>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 283

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 12/40 (30%), Positives = 15/40 (37%)
 Frame = +2

Query: 224 GGGVLRAELANLNASFGRRGWRRASFASLKKSATSSNWPP 343
           G GV   +    NA F  R W +     L     S+ W P
Sbjct: 68  GFGVTSLDEVAYNAKFWGRNWNKGECIELVLRDASNRWLP 107


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 97  RSQRPVPVEQLEYRHQLLEFQHRPTFVRFQHE 2
           R+  P+P +  E +  L  F+HR +F + + E
Sbjct: 329 RANSPIPSQLSENKLTLESFEHRKSFDQVREE 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,328,742
Number of Sequences: 5004
Number of extensions: 19008
Number of successful extensions: 66
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)