Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10600
(461 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1085 - 8886868-8887556,8887629-8888574 32 0.26
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 31 0.60
11_06_0621 + 25587476-25587604,25588230-25588423,25588800-255888... 30 1.0
02_01_0072 - 502785-504038 30 1.0
03_02_0436 + 8427018-8427707,8429005-8429544 29 2.4
10_01_0161 + 1817783-1818862 28 3.2
07_03_0780 + 21467056-21467187,21467928-21468231,21469289-21469569 28 3.2
04_04_0451 - 25323178-25323241,25323614-25323741,25324533-253246... 27 5.6
12_02_1215 + 27070164-27070302,27070308-27071098 27 7.3
11_01_0407 + 3090880-3092010 27 7.3
09_06_0331 + 22379987-22380078,22380914-22381058 27 7.3
09_02_0184 - 5485231-5485743 27 7.3
09_02_0039 + 3293904-3294584 27 7.3
08_02_1281 - 25849918-25851099 27 7.3
10_07_0144 - 13367579-13368805,13369540-13369578,13369662-133698... 27 9.7
05_05_0358 - 24388718-24388926,24390069-24390540 27 9.7
01_06_1733 + 39537618-39537722,39537865-39538028,39539796-395401... 27 9.7
01_05_0471 + 22535477-22535609,22535714-22535808,22535929-225360... 27 9.7
01_04_0112 - 16127785-16128279,16128883-16128986,16129304-16129454 27 9.7
>06_01_1085 - 8886868-8887556,8887629-8888574
Length = 544
Score = 31.9 bits (69), Expect = 0.26
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 101 RERQCSRQEVVAHYSARALDD--AMREQMAREWATREREASSSGGGVL 238
R R+ R VV SAR +D A+RE+ + R R AS GGGV+
Sbjct: 134 RWRRLRRVAVVHLLSARRVDSFRALREEEVASFVNRIRAASGGGGGVV 181
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 30.7 bits (66), Expect = 0.60
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 146 ARALDDAMRE--QMAREWATREREASSSGGGVLRAELANLNASFGRRGWRR 292
AR L + M+E Q +W R SS GGG R + A FG R +RR
Sbjct: 703 ARPLSELMQEANQEVPQWLERYAARSSFGGGGGRNRRSGGGARFGGRDFRR 753
>11_06_0621 +
25587476-25587604,25588230-25588423,25588800-25588874,
25589434-25591852
Length = 938
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 103 RAAMLAAGSRSALLGSGTRRRDAGTDGARMGHQGA*SVFVRW 228
RAA G +A GS +RR+ G + G +G S F +W
Sbjct: 72 RAARARVGGAAAGTGSAAQRREQGKGSHQPGTEGRQSSFKKW 113
>02_01_0072 - 502785-504038
Length = 417
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 164 AMREQMAREWATREREASSSGGGVLRAELANLNA 265
A++E++A EW ++++ SSSG LA + A
Sbjct: 274 ALQERIADEWRKKDKKGSSSGSAAATGLLAEMQA 307
>03_02_0436 + 8427018-8427707,8429005-8429544
Length = 409
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 101 RERQCSRQEVVAHYSARALDDAMREQMAR-EWATREREASSSGGGVLRAELANLNASFGR 277
++ + + + ++ ++ DA+R M R AT E S +GGG+ R +L+A
Sbjct: 347 QQEEAMQAPMSPQHTVASIQDALRAVMERTASATEESGGSGAGGGLKRQRTTSLSAILEN 406
Query: 278 R 280
R
Sbjct: 407 R 407
>10_01_0161 + 1817783-1818862
Length = 359
Score = 28.3 bits (60), Expect = 3.2
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +2
Query: 23 GRTMLEFQELMTVFQLLHWNGSLRAMRERQCSRQEVVAHYSARALDDAMREQMAREWATR 202
GRT QLLHW A++ R C+ + Y + A RE + W
Sbjct: 59 GRTASSLPLRYAAPQLLHWPDDAAAVQLRLCAHGRHLVLYVSMARCSMFREWLDTYWVCL 118
Query: 203 EREASSS-GGGVL 238
+ A+++ GG L
Sbjct: 119 DALAAAALLGGAL 131
>07_03_0780 + 21467056-21467187,21467928-21468231,21469289-21469569
Length = 238
Score = 28.3 bits (60), Expect = 3.2
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
Frame = +1
Query: 88 AESDARAAMLA-----AGSRSALLGSGTR---RRDAGTDGARMGHQGA 207
A+ D AA+LA A RSA GSG R R G DG R+G +GA
Sbjct: 26 ADDDDEAAVLAPTLSCADLRSAADGSGGRLGARGAGGGDGGRLGARGA 73
>04_04_0451 -
25323178-25323241,25323614-25323741,25324533-25324634,
25325314-25325382,25325489-25325557,25325646-25325720,
25325805-25325909,25326394-25326492,25326626-25328344,
25328629-25328931,25329031-25329129,25329733-25329850,
25329933-25330018,25330091-25330159,25330232-25330306,
25330675-25330772,25331271-25331432,25332391-25332556,
25332902-25332970,25333064-25333126,25333221-25333376,
25334027-25334365
Length = 1410
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +2
Query: 143 SARALDDAMREQMAREWATREREASSSGGGVLRAELANLNASFGRRGWRR 292
SAR + E M + TRER S G + + +L+ F RR R
Sbjct: 617 SARNGGSRLLESMTTQLGTRERSRSPYLGNISSESMTSLSLPFPRRSLER 666
>12_02_1215 + 27070164-27070302,27070308-27071098
Length = 309
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -1
Query: 392 RRAWCC*DHGCGGGARRAASWR 327
R +W GCGGG R WR
Sbjct: 185 RGSWALGSSGCGGGDRVCGHWR 206
>11_01_0407 + 3090880-3092010
Length = 376
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 212 ASSSGGGVLRAELANLNASFGRRGWRRASFASLKKSATSSN 334
A++ GGGV ++ N SFGR + A+L S++SS+
Sbjct: 140 AAAGGGGVASFLSSHRNRSFGRARASPSRSATLASSSSSSS 180
>09_06_0331 + 22379987-22380078,22380914-22381058
Length = 78
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -3
Query: 339 GQLEDVALFFREAKLAR-RQPRRPKLAFRFASSARSTP 229
G+L++ L + + A+ +Q RRPK++ FA SAR P
Sbjct: 9 GELDNHELNLEDLEDAKMQQSRRPKISRPFAPSARPQP 46
>09_02_0184 - 5485231-5485743
Length = 170
Score = 27.1 bits (57), Expect = 7.3
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Frame = +2
Query: 80 NGSLRAMRERQCSRQEVVAHYSARALDDAMREQMAREWATREREAS------SSGGGVLR 241
+ +R RE R V+ +A+ A R+ W R R+A+ GGGV R
Sbjct: 93 SSGMRQRREAAPRRTVVLVGTAAKGGGGA-RQGYGGGWRRRSRQAAVLVGPPDGGGGVRR 151
Query: 242 AELANLNASFGRRGWRR 292
G GWRR
Sbjct: 152 RRGGRRRDGLGGDGWRR 168
>09_02_0039 + 3293904-3294584
Length = 226
Score = 27.1 bits (57), Expect = 7.3
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 124 GSRSALLGSGTRRRDAGTDGARMGHQ-GA*SVFVRWRSTTRGAGE 255
GS + LGSG R GT G+R G G+ RW+ RG+G+
Sbjct: 94 GSAATALGSGGGGRGGGTRGSRDGGAGGSRDGGARWQ-RGRGSGQ 137
>08_02_1281 - 25849918-25851099
Length = 393
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 215 TLHAPWWPILAPSVPASRRLVPE 147
+L P WP+ +P+ P++R L+PE
Sbjct: 3 SLLLPPWPLPSPASPSARLLLPE 25
>10_07_0144 -
13367579-13368805,13369540-13369578,13369662-13369826,
13370083-13370193
Length = 513
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 380 CC*DHGCGGGARRAASWRMSRFSLGK 303
CC GGARR A R S SLG+
Sbjct: 38 CCSSSSSSGGARRRARERESEESLGE 63
>05_05_0358 - 24388718-24388926,24390069-24390540
Length = 226
Score = 26.6 bits (56), Expect = 9.7
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +2
Query: 191 WATREREASSSGGGVLRAELANLNASFGRRGWRR-ASFASLKKSATSSNWPP 343
W +E + SS G + +E S GRRGWRR K SS PP
Sbjct: 55 WLMKEGKRSSQDGESVTSE----EESGGRRGWRRWRREGQSPKPPASSFTPP 102
>01_06_1733 +
39537618-39537722,39537865-39538028,39539796-39540102,
39540914-39541221,39541421-39541580
Length = 347
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 119 RQEVVAHYSARALDDAMREQMAREWATREREASSSGGGVLRA 244
R+ + AH + A + E + + +ER+A++ GG V RA
Sbjct: 25 RRRIPAHSTVLASASPVLESILQRRLKKERDAAAGGGKVRRA 66
>01_05_0471 +
22535477-22535609,22535714-22535808,22535929-22536050,
22536165-22536702,22536774-22538105
Length = 739
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 437 YLKLKTIIK*RVAGVRRAWCC*DHGCGGG 351
Y + + K + VR A C D GCGGG
Sbjct: 135 YCNIYVVAKGKSVNVRLAKCGVDGGCGGG 163
>01_04_0112 - 16127785-16128279,16128883-16128986,16129304-16129454
Length = 249
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 109 PLAHRSQRPVPVEQLEYRHQLLEFQHRPT 23
PLA S P+P + YRH LL P+
Sbjct: 195 PLASSSPHPLPSSSILYRHPLLFSSSSPS 223
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,726,215
Number of Sequences: 37544
Number of extensions: 190068
Number of successful extensions: 1074
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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