Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10600
(461 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22788| Best HMM Match : No HMM Matches (HMM E-Value=.) 123 8e-29
SB_16016| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08) 27 5.7
SB_53071| Best HMM Match : TSP_1 (HMM E-Value=4.3e-05) 27 5.7
SB_37538| Best HMM Match : zf-CCHC (HMM E-Value=0.0011) 27 5.7
SB_16404| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08) 27 5.7
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36) 27 10.0
SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30) 27 10.0
SB_4640| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
>SB_22788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 123 bits (296), Expect = 8e-29
Identities = 54/70 (77%), Positives = 62/70 (88%)
Frame = +2
Query: 2 FMLEANKGRTMLEFQELMTVFQLLHWNGSLRAMRERQCSRQEVVAHYSARALDDAMREQM 181
FMLEANKGRTMLEFQELMT+FQLLHWNGSL+AMR+R CSRQEV AHY+ R +DD MR QM
Sbjct: 296 FMLEANKGRTMLEFQELMTIFQLLHWNGSLKAMRDRNCSRQEVFAHYNERIIDDDMRSQM 355
Query: 182 AREWATRERE 211
A +W +RE+E
Sbjct: 356 ALDWISREQE 365
>SB_16016| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08)
Length = 890
Score = 27.5 bits (58), Expect = 5.7
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -2
Query: 172 PHRVV*CPSRVVRYDFLPRA--LPLAHRSQRPVPVEQLEYRHQLLEFQHRPTFV 17
P + CP+ VR D + RS+ V Q+E H+ QH PTFV
Sbjct: 75 PRGKINCPAANVRCDKCTKVGHFDAVCRSKPNTRVSQVEDAHEGEVLQHNPTFV 128
>SB_53071| Best HMM Match : TSP_1 (HMM E-Value=4.3e-05)
Length = 755
Score = 27.5 bits (58), Expect = 5.7
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +2
Query: 92 RAMRERQCSRQEVVAHYSARALDDAMREQMAREWATRER 208
R MRER R+ V+ + R + AMRE++ RE A RER
Sbjct: 697 RVMRER-VMRERVMRERAMR--ERAMRERVMRERAMRER 732
Score = 27.5 bits (58), Expect = 5.7
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +2
Query: 92 RAMRERQCSRQEVVAHYSARALDDAMREQMAREWATRER 208
RAMRER R+ + + R + AMRE++ RE A RER
Sbjct: 717 RAMRER-VMRERAMRERAMR--ERAMRERVMRERAMRER 752
>SB_37538| Best HMM Match : zf-CCHC (HMM E-Value=0.0011)
Length = 215
Score = 27.5 bits (58), Expect = 5.7
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -2
Query: 172 PHRVV*CPSRVVRYDFLPRALPLAH--RSQRPVPVEQLEYRHQLLEFQHRPTFV 17
P + CP+ VR D + +A RS+ V Q+E H+ +H PTFV
Sbjct: 82 PRGKINCPAANVRCDKCTKVGHIAAVCRSKPNTRVSQVEDAHEGEVLEHNPTFV 135
>SB_16404| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08)
Length = 765
Score = 27.5 bits (58), Expect = 5.7
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -2
Query: 172 PHRVV*CPSRVVRYDFLPRA--LPLAHRSQRPVPVEQLEYRHQLLEFQHRPTFV 17
P + CP+ VR D + RS+ V Q+E H+ QH PTFV
Sbjct: 57 PRGKINCPAANVRCDKCTKVGHFDAVCRSKPNTRVSQVEDAHEGEVLQHNPTFV 110
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 78 QWSSWNTVISSWNSSIVRPLFASSMN 1
+W V+SSWNSS P++A N
Sbjct: 143 RWCCMGKVLSSWNSSRGGPIYARYKN 168
>SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 230 RHRTKTLHAPWWPILAPSVPASRRLV-PEP 144
R RT+T HAP P L P+ R + P+P
Sbjct: 413 RSRTRTAHAPSVPALTIQTPSGRMVCSPDP 442
>SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1017
Score = 27.1 bits (57), Expect = 7.6
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -2
Query: 172 PHRVV*CPSRVVRYDFLPRA--LPLAHRSQRPVPVEQLEYRHQLLEFQHRPTFV 17
P + CP+ VR D + + RS+ V Q+E H+ +H PTFV
Sbjct: 174 PRGKINCPAANVRCDKCTKVGHFAVVCRSKPNTRVSQVEDAHEGEVLEHNPTFV 227
>SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36)
Length = 1198
Score = 26.6 bits (56), Expect = 10.0
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -2
Query: 172 PHRVV*CPSRVVRYDFLPRALPLAH--RSQRPVPVEQLEYRHQLLEFQHRPTFV 17
P + CP+ VR D + A RS+ V Q+E H+ +H PTFV
Sbjct: 10 PRGKINCPAANVRCDKCTKVGHFAAVCRSKPNTRVSQVEDAHEGEVLEHNPTFV 63
>SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)
Length = 1191
Score = 26.6 bits (56), Expect = 10.0
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -2
Query: 172 PHRVV*CPSRVVRYDFLPRALPLAH--RSQRPVPVEQLEYRHQLLEFQHRPTFV 17
P + CP+ VR D + A RS+ V Q+E H+ +H PTFV
Sbjct: 224 PRGKINCPAANVRCDKCTKVGHFAAVCRSKPNTRVSQVEDAHEGEVLEHNPTFV 277
>SB_4640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 227 HRTKTLHAPWWPILAPSVPASRRL 156
HR+ T+ A W PIL P+ + L
Sbjct: 106 HRSTTIKATWQPILVPTTSSESSL 129
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,897,412
Number of Sequences: 59808
Number of extensions: 164713
Number of successful extensions: 590
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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