Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10600
         (461 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41746-6|AAA83333.1|  388|Caenorhabditis elegans Mediator protei...    29   1.2  
U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z46793-1|CAA86770.1|  367|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical ...    27   6.5  
U41535-2|AAB63402.1|  731|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U41535-1|AAK67247.1|  734|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U41746-6|AAA83333.1|  388|Caenorhabditis elegans Mediator protein
           27 protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 86  SLRAMRERQCSRQEVVAHYSARALDDAMREQMAREWATREREASSSGGGV 235
           +L    E   S+ E +   S +ALD++M+E    E  +R REA S  G +
Sbjct: 70  ALNQWAEVMKSKLEKMRQKSKKALDESMKEHSTMEDLSRAREALSEMGNM 119


>U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical protein
            C01F4.2a protein.
          Length = 986

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -3

Query: 303  AKLARRQPRRPKLAFRFASSARSTP 229
            A  ARR+ R    AFRF S  RSTP
Sbjct: 956  AAAARRRLRNVVRAFRFTSMTRSTP 980


>Z46793-1|CAA86770.1|  367|Caenorhabditis elegans Hypothetical
           protein C56G7.2 protein.
          Length = 367

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 116 SRQEVVAHYSARALDDAMREQMAREWATREREASSSGGGVLRAELANL 259
           +R+EV+     +  DDA R    R +  R   A+ SG G  R ++ +L
Sbjct: 292 NREEVLKDLDVQ--DDAYRSLNTRWYVARRSRANPSGNGCARKKMGSL 337


>AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical
           protein E02H9.5 protein.
          Length = 475

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 168 CGNRWRENGPPGSVKRLRPVAEYYARS 248
           CG  W    P G +K LR V E YA +
Sbjct: 344 CGETWIRYAPDGLLKILRYVKEKYANT 370


>U41535-2|AAB63402.1|  731|Caenorhabditis elegans Hypothetical
           protein F18A1.6a protein.
          Length = 731

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 236 LRAELANLNASFGRRGWRRASFASLKKSATSSNWP 340
           LRA     N     +G RRA   S+  S TSS WP
Sbjct: 538 LRAYRHKYNPYLKLQGVRRAELPSVIMSGTSSPWP 572


>U41535-1|AAK67247.1|  734|Caenorhabditis elegans Hypothetical
           protein F18A1.6b protein.
          Length = 734

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 236 LRAELANLNASFGRRGWRRASFASLKKSATSSNWP 340
           LRA     N     +G RRA   S+  S TSS WP
Sbjct: 541 LRAYRHKYNPYLKLQGVRRAELPSVIMSGTSSPWP 575


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,702,844
Number of Sequences: 27780
Number of extensions: 115046
Number of successful extensions: 392
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)