Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10600
(461 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g01330.1 68417.m00173 protein kinase family protein contains ... 30 0.88
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 30 0.88
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 29 2.0
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 29 2.0
At4g34610.1 68417.m04916 homeodomain-containing protein similari... 27 6.2
At4g11300.1 68417.m01826 expressed protein 27 8.2
At1g80870.1 68414.m09489 protein kinase family protein contains ... 27 8.2
At1g47220.1 68414.m05227 cyclin, putative similar to cyclin A-li... 27 8.2
>At4g01330.1 68417.m00173 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; contains
serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 329
Score = 29.9 bits (64), Expect = 0.88
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = -3
Query: 339 GQLEDVALFFREAKL-ARRQPRRPKLAFRFASSARSTPP 226
G L +ALFF L +RR+ R+P+ A FAS+A +TPP
Sbjct: 35 GSLIVIALFFLSLCLTSRRRNRKPRHA-DFASAAVATPP 72
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 29.9 bits (64), Expect = 0.88
Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 146 ARALDDAMRE--QMAREWATREREASSSGGGVLRAELANLNASFGRRGWRR-ASFAS 307
AR L + M+E Q EW TR SS GGG R FG R +RR SF S
Sbjct: 530 ARPLAELMQEANQEVPEWLTRYASRSSFGGGKNRRS----GGRFGGRDFRREGSFGS 582
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 28.7 bits (61), Expect = 2.0
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 146 ARALDDAMRE--QMAREWATREREASSSGGGVLRAELANLNASFGRRGWRR 292
AR+L + M+E Q EW TR +S GGG R+ FG R +RR
Sbjct: 520 ARSLAELMQEANQEVPEWLTRYASRASFGGGKKRS-----GGRFGGRDFRR 565
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 28.7 bits (61), Expect = 2.0
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 146 ARALDDAMRE--QMAREWATREREASSSGGGVLRAELANLNASFGRRGWRR 292
AR+L + M+E Q EW TR +S GGG R+ FG R +RR
Sbjct: 520 ARSLAELMQEANQEVPEWLTRYASRASFGGGKKRS-----GGRFGGRDFRR 565
>At4g34610.1 68417.m04916 homeodomain-containing protein similaritry
to homeotic protein BEL1, Arabidopsis thaliana,
PIR2:A57632
Length = 532
Score = 27.1 bits (57), Expect = 6.2
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 122 QEVVAHYSARALDDAMREQMAREWATREREASSSGGGVLRAELANLNASFGRRGWR 289
Q + YS + R + A++ER+A S GGV ++ N+ FG WR
Sbjct: 17 QNAIVSYSEESAGRERRTEANNVSASQERQALSRFGGV--PQMQNIGQDFG--SWR 68
>At4g11300.1 68417.m01826 expressed protein
Length = 371
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 203 EREASSSGGGVLRAELANLNASFGRRGWRRASFASLKKSATSSNW 337
++ + SSGGG R + +SFGRR + S NW
Sbjct: 166 DKNSGSSGGGSGRRSSTDQWSSFGRRSGGSSGGGGGGAGCVSKNW 210
>At1g80870.1 68414.m09489 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 692
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 275 RRGWRRASFASLKKSATSSN 334
RRGWRR S +S KK ++N
Sbjct: 507 RRGWRRKSNSSSKKKKKNNN 526
>At1g47220.1 68414.m05227 cyclin, putative similar to cyclin A-like
protein [Nicotiana tabacum] GI:1064931, A-type cyclin
[Catharanthus roseus] GI:2190259; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 327
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 100 HRSQRPVPVEQLEYRHQLLEFQ 35
H Q PVE E RH+LL FQ
Sbjct: 13 HNPQDASPVEWAEIRHKLLAFQ 34
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,501,923
Number of Sequences: 28952
Number of extensions: 113340
Number of successful extensions: 385
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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