Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10593X
(420 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111; Eukar... 102 3e-21
UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S riboso... 94 1e-18
UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27; Viri... 88 6e-17
UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2; Basidio... 87 1e-16
UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6; Trichom... 81 7e-15
UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=... 79 4e-14
UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26; Fungi/... 78 8e-14
UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=... 71 1e-11
UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9; Oligohy... 70 2e-11
UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5; Ascomyc... 69 5e-11
UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=... 68 7e-11
UniRef50_Q4N9B5 Cluster: 60S ribosomal protein L13e, putative; n... 60 2e-08
UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1; ... 60 2e-08
UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillar... 58 5e-08
UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoe... 57 2e-07
UniRef50_UPI0000DC2213 Cluster: UPI0000DC2213 related cluster; n... 55 7e-07
UniRef50_UPI00005A0D5A Cluster: PREDICTED: similar to ribosomal ... 54 1e-06
UniRef50_Q8SSC1 Cluster: 60S RIBOSOMAL PROTEIN L13; n=1; Encepha... 50 1e-05
UniRef50_Q018B3 Cluster: Chromosome 05 contig 1, DNA sequence; n... 42 0.007
UniRef50_A2YRI3 Cluster: 60S ribosomal protein L13; n=2; Oryza s... 39 0.047
UniRef50_Q6LAB9 Cluster: 60S ribosomal protein L13; n=1; Arabido... 33 1.8
UniRef50_Q54070 Cluster: Poly(3-hydroxybutyrate) depolymerase; n... 33 3.1
UniRef50_A6GTV9 Cluster: Putative uncharacterized protein; n=1; ... 33 3.1
UniRef50_Q47VA1 Cluster: Voltage-gated chloride channel; n=1; Co... 32 4.1
UniRef50_Q7KTI0 Cluster: CG17608-PA, isoform A; n=3; Sophophora|... 32 4.1
UniRef50_O22236 Cluster: Putative uncharacterized protein T32N15... 32 5.4
UniRef50_UPI0000E49D21 Cluster: PREDICTED: similar to LOC495497 ... 31 9.5
UniRef50_A6PBF3 Cluster: Diguanylate cyclase precursor; n=1; She... 31 9.5
UniRef50_Q4WCW8 Cluster: C2H2 finger domain protein, putative; n... 31 9.5
>UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111;
Eukaryota|Rep: 60S ribosomal protein L13 - Homo sapiens
(Human)
Length = 211
Score = 102 bits (244), Expect = 3e-21
Identities = 46/76 (60%), Positives = 52/76 (68%)
Frame = +3
Query: 30 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVR 209
N M+ HFHKDWQR V TWFNQPAR+ RR++ R +RPIVRCPTVR
Sbjct: 6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVR 65
Query: 210 YHTKVRAGRGFTLREL 257
YHTKVRAGRGF+L EL
Sbjct: 66 YHTKVRAGRGFSLEEL 81
Score = 74.9 bits (176), Expect = 6e-13
Identities = 34/46 (73%), Positives = 41/46 (89%)
Frame = +2
Query: 263 AGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPK 400
AG++ ARTIGI+VDPRRRNKS ESLQ NVQR+KEYR++LILFP+
Sbjct: 84 AGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPR 129
>UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S ribosomal
protein L13; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to 60S ribosomal protein L13 - Tribolium
castaneum
Length = 198
Score = 93.9 bits (223), Expect = 1e-18
Identities = 44/80 (55%), Positives = 52/80 (65%)
Frame = +3
Query: 18 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 197
M + NNMIPNGHFHK WQ+ VK WFNQP ++ RRK R LRP+V C
Sbjct: 1 MVRHNNMIPNGHFHKKWQQKVKLWFNQPMKKLRRKALR-AKKSRQLAPKPTELLRPLVHC 59
Query: 198 PTVRYHTKVRAGRGFTLREL 257
P+ RY +KVRAGRGFT +EL
Sbjct: 60 PSERYKSKVRAGRGFTFQEL 79
Score = 63.7 bits (148), Expect = 1e-09
Identities = 29/53 (54%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
Frame = +2
Query: 263 AGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGK-KVLK 418
AG++ +AR+ G+AVDPRRRN+ ES+ N+QR+ EY++RLI P K KVLK
Sbjct: 82 AGMSDKYARSFGVAVDPRRRNRCTESIAANIQRLIEYKSRLIFLPDSKNKVLK 134
>UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27;
Viridiplantae|Rep: 60S ribosomal protein L13-3 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 206
Score = 88.2 bits (209), Expect = 6e-17
Identities = 40/78 (51%), Positives = 50/78 (64%)
Frame = +3
Query: 24 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 203
K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+ R LRP+V T
Sbjct: 2 KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 204 VRYHTKVRAGRGFTLREL 257
++Y+ KVRAG+GFTL EL
Sbjct: 62 LKYNMKVRAGKGFTLEEL 79
Score = 61.3 bits (142), Expect = 8e-09
Identities = 27/52 (51%), Positives = 40/52 (76%)
Frame = +2
Query: 263 AGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLK 418
AG+ A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP+ + +K
Sbjct: 82 AGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVK 133
>UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2;
Basidiomycota|Rep: 60S ribosomal protein L13 - Ustilago
maydis (Smut fungus)
Length = 209
Score = 87.0 bits (206), Expect = 1e-16
Identities = 39/78 (50%), Positives = 50/78 (64%)
Frame = +3
Query: 24 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 203
K NN++ N HF KDWQR VK WF+QP + RR+ R LRP VRCPT
Sbjct: 4 KHNNILHNNHFRKDWQRRVKVWFDQPGAKKRRRTAR-EAKAAKLGLRPVQLLRPAVRCPT 62
Query: 204 VRYHTKVRAGRGFTLREL 257
+RY+TK+R+GRGFT+ E+
Sbjct: 63 LRYNTKIRSGRGFTIEEV 80
Score = 66.1 bits (154), Expect = 3e-10
Identities = 30/47 (63%), Positives = 39/47 (82%)
Frame = +2
Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPK 400
AAGL +AR++GI VD RRRNKS ESL++NV+RIK Y+ARL++ PK
Sbjct: 82 AAGLGKKYARSVGIPVDHRRRNKSEESLKLNVERIKAYQARLVVIPK 128
>UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L13
- Trichomonas vaginalis G3
Length = 210
Score = 81.4 bits (192), Expect = 7e-15
Identities = 40/82 (48%), Positives = 47/82 (57%)
Frame = +3
Query: 12 VKMGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIV 191
++M NN IPN H K W VKT+F+ PAR RR+ R LRPIV
Sbjct: 20 LEMVAKNNQIPNDHLRKYWYHRVKTYFDDPARAQRRRNARNLRAKKIAPRPAEGPLRPIV 79
Query: 192 RCPTVRYHTKVRAGRGFTLREL 257
RCPTVRY+ K R GRGFT +EL
Sbjct: 80 RCPTVRYNMKTRLGRGFTPKEL 101
Score = 48.0 bits (109), Expect = 8e-05
Identities = 24/51 (47%), Positives = 33/51 (64%)
Frame = +2
Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKV 412
AAG +P AR GIAVD RR + ++ NV+R++ Y+ARLI KG+ V
Sbjct: 103 AAGFDPALARFQGIAVDARRAHSKDAMVKQNVERLQAYKARLIKVKKGETV 153
>UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L13, putative
- Cryptosporidium parvum Iowa II
Length = 207
Score = 79.0 bits (186), Expect = 4e-14
Identities = 37/76 (48%), Positives = 48/76 (63%)
Frame = +3
Query: 30 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVR 209
NN+IPN H+HK+++R++KTW+NQP R+ R+ R LRPIV PT R
Sbjct: 4 NNVIPNVHYHKNYKRWIKTWYNQPGRKQSRRIAR-QKAVAEAGFRPVGMLRPIVHPPTQR 62
Query: 210 YHTKVRAGRGFTLREL 257
Y+ K R GRGFTL EL
Sbjct: 63 YNMKTRLGRGFTLEEL 78
Score = 51.2 bits (117), Expect = 8e-06
Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Frame = +2
Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLK 418
A G+N A +IGIAVD RR + S E+ QINV R+K+Y ++L P KGKK K
Sbjct: 80 ACGINKKAAMSIGIAVDHRRTDLSEETFQINVDRLKKYINGIVLQPRKGKKTKK 133
>UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26;
Fungi/Metazoa group|Rep: 60S ribosomal protein L13 -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 243
Score = 77.8 bits (183), Expect = 8e-14
Identities = 35/68 (51%), Positives = 46/68 (67%)
Frame = +3
Query: 54 FHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAG 233
FHKDWQR V+ F+QP R++RR++ R+ LRP+VRCPTV+Y+ +VR G
Sbjct: 31 FHKDWQRRVRVHFDQPGRKHRRREARLAKAAAVAPRPVDK-LRPVVRCPTVKYNRRVRVG 89
Query: 234 RGFTLREL 257
RGFTL EL
Sbjct: 90 RGFTLAEL 97
Score = 59.3 bits (137), Expect = 3e-08
Identities = 29/46 (63%), Positives = 35/46 (76%)
Frame = +2
Query: 263 AGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPK 400
AG+ ART+GIAVD RR N S ESL NV R+K+Y+ARLILFP+
Sbjct: 100 AGIPKKLARTVGIAVDHRRVNYSKESLVANVARLKDYKARLILFPR 145
>UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=5;
Plasmodium|Rep: 60S ribosomal protein L13, putative -
Plasmodium chabaudi
Length = 215
Score = 70.5 bits (165), Expect = 1e-11
Identities = 43/118 (36%), Positives = 59/118 (50%)
Frame = +3
Query: 30 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVR 209
NN++PN H HK WQR+V+ FN+ +R +R+ R L P+V CPT R
Sbjct: 5 NNVLPNVHLHKWWQRYVRVDFNKNIKRKQRRLLR-EKRRKQNGGTPIEKLHPVVHCPTQR 63
Query: 210 YHTKVRAGRGFTLRELGPQD*TQYLPERLELL*IPVDATSLLNHCKSMFKE*RNTERV 383
Y+ K R G+GFTL E+ + P + I VD N C+ KE N ER+
Sbjct: 64 YNYKTRLGKGFTLEEIKA---VKLTPSAARSIGIIVDKRR-KNRCEESLKE--NAERL 115
Score = 46.4 bits (105), Expect = 2e-04
Identities = 22/49 (44%), Positives = 32/49 (65%)
Frame = +2
Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGK 406
A L P AR+IGI VD RR+N+ ESL+ N +R+++Y L++ P K
Sbjct: 81 AVKLTPSAARSIGIIVDKRRKNRCEESLKENAERLQKYLNSLVMIPLKK 129
>UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9;
Oligohymenophorea|Rep: 60S ribosomal protein L13 -
Paramecium tetraurelia
Length = 208
Score = 69.7 bits (163), Expect = 2e-11
Identities = 34/78 (43%), Positives = 46/78 (58%)
Frame = +3
Query: 24 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 203
K N +PN H K W RFVKT++NQPA + RR+Q R LRP+VR T
Sbjct: 2 KHNQQLPNAHMRKHWTRFVKTFYNQPAAK-RRRQLRRRAQALSASPRPVELLRPVVRGQT 60
Query: 204 VRYHTKVRAGRGFTLREL 257
++Y++ + GRGF+L EL
Sbjct: 61 IKYNSVQKLGRGFSLIEL 78
Score = 59.7 bits (138), Expect = 2e-08
Identities = 26/46 (56%), Positives = 36/46 (78%)
Frame = +2
Query: 263 AGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPK 400
AGLN FART+GI+VD RRRN + E L NV+R+K Y ++L+L+P+
Sbjct: 81 AGLNAAFARTVGISVDHRRRNLNQEELNNNVKRLKAYLSKLVLYPR 126
>UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5;
Ascomycota|Rep: 60S ribosomal protein L13 - Candida
albicans (Yeast)
Length = 202
Score = 68.5 bits (160), Expect = 5e-11
Identities = 33/71 (46%), Positives = 43/71 (60%)
Frame = +3
Query: 45 NGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKV 224
N HF K WQ V+ F+Q ++ R+Q+R+ LRP+VR PTV+Y+ KV
Sbjct: 11 NNHFRKHWQERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKV 69
Query: 225 RAGRGFTLREL 257
RAGRGFTL EL
Sbjct: 70 RAGRGFTLAEL 80
Score = 60.1 bits (139), Expect = 2e-08
Identities = 26/50 (52%), Positives = 38/50 (76%)
Frame = +2
Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKK 409
A G+ P +ARTIGI+VD RR+NKS E+ NV R++EY+++L++F K K
Sbjct: 82 AVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFDKKTK 131
>UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=7;
Trypanosomatidae|Rep: 60S ribosomal protein L13,
putative - Trypanosoma brucei
Length = 229
Score = 68.1 bits (159), Expect = 7e-11
Identities = 39/86 (45%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Frame = +3
Query: 18 MGKGNNMIPNGHFHKDWQRF------VKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXL 179
M KGNN IP+ H K W VK +FNQPA++ RR++ R+ L
Sbjct: 12 MPKGNNAIPHVHQRKHWNPCSSQKGNVKVFFNQPAQKQRRRRLRLLKAKKIFPRPLKA-L 70
Query: 180 RPIVRCPTVRYHTKVRAGRGFTLREL 257
RP V CPTVRY+ K R GRGF+L EL
Sbjct: 71 RPQVNCPTVRYNMKRRLGRGFSLEEL 96
Score = 67.3 bits (157), Expect = 1e-10
Identities = 30/50 (60%), Positives = 39/50 (78%)
Frame = +2
Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKK 409
AAG+ P +ARTIGI VD RR+NKS E + INVQR+K Y ++L+LFP +K
Sbjct: 98 AAGVKPRYARTIGIRVDRRRKNKSEEGMNINVQRLKTYMSKLVLFPLNRK 147
>UniRef50_Q4N9B5 Cluster: 60S ribosomal protein L13e, putative; n=4;
Piroplasmida|Rep: 60S ribosomal protein L13e, putative -
Theileria parva
Length = 205
Score = 59.7 bits (138), Expect = 2e-08
Identities = 27/52 (51%), Positives = 36/52 (69%)
Frame = +2
Query: 263 AGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLK 418
AGL AR++G+AVD RR NK ESL +NV R+K Y ++L+LFP+ K K
Sbjct: 82 AGLGKKVARSVGVAVDHRRTNKCAESLNLNVNRLKTYLSKLVLFPRKKHAKK 133
Score = 54.8 bits (126), Expect = 7e-07
Identities = 33/80 (41%), Positives = 43/80 (53%)
Frame = +3
Query: 18 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 197
M K NNM+ + H K RFVK NQ ++ RR+ R LRP+V
Sbjct: 1 MVKHNNMLSDVHRVKCSHRFVKPVLNQAGKKKRRRLAR-QRKAAASGLTPTGYLRPLVHM 59
Query: 198 PTVRYHTKVRAGRGFTLREL 257
P+ RY+ K+R GRGFTL+EL
Sbjct: 60 PSRRYNYKLRFGRGFTLQEL 79
>UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1;
Schizosaccharomyces pombe|Rep: Putative uncharacterized
protein - Schizosaccharomyces pombe (Fission yeast)
Length = 70
Score = 59.7 bits (138), Expect = 2e-08
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = +3
Query: 39 IPNGHFHKDWQRFVKTWFNQPARRYRRK 122
+PN HFHKDWQR+VKTWFNQP R+ RR+
Sbjct: 12 LPNAHFHKDWQRYVKTWFNQPGRKLRRQ 39
>UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillardia
theta|Rep: 60S ribosomal protein L13 - Guillardia theta
(Cryptomonas phi)
Length = 127
Score = 58.4 bits (135), Expect = 5e-08
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +3
Query: 48 GHFHKDWQRFVKTWFNQPARRY-RRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKV 224
GHF K W+ V T FNQP + RRK + L+P+V+CPT ++TK+
Sbjct: 10 GHFRKKWKNLVITNFNQPILKIKRRKIRKNKKKNFLKKAIFYKKLKPLVKCPTRMHNTKI 69
Query: 225 RAGRGFTLREL 257
+ GRGF+++E+
Sbjct: 70 KLGRGFSIQEI 80
>UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoeba
histolytica|Rep: 60S ribosomal protein L13 - Entamoeba
histolytica
Length = 138
Score = 56.8 bits (131), Expect = 2e-07
Identities = 28/68 (41%), Positives = 37/68 (54%)
Frame = +3
Query: 54 FHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAG 233
F KDW+ V TW QP R+ RR Q R+ L+P V C R++ K+R G
Sbjct: 12 FGKDWRSKVHTWVQQPFRKIRRHQTRV-EKAKSVFPATIKSLKPSVHCMNQRFNYKLRLG 70
Query: 234 RGFTLREL 257
RGF+L+EL
Sbjct: 71 RGFSLKEL 78
Score = 48.8 bits (111), Expect = 4e-05
Identities = 26/52 (50%), Positives = 32/52 (61%)
Frame = +2
Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVL 415
AA ++ ARTIGIAVDPRR+ S E L N QR+ EY RL L K++
Sbjct: 80 AAKIDKNLARTIGIAVDPRRKESSKECLTRNAQRLTEYMNRLCLKSVSVKIV 131
>UniRef50_UPI0000DC2213 Cluster: UPI0000DC2213 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC2213 UniRef100 entry -
Rattus norvegicus
Length = 173
Score = 54.8 bits (126), Expect = 7e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +3
Query: 177 LRPIVRCPTVRYHTKVRAGRGFTLREL 257
+RPIVRCPTVRYHTKVR GRGF+L E+
Sbjct: 13 IRPIVRCPTVRYHTKVRGGRGFSLEEI 39
Score = 39.9 bits (89), Expect = 0.021
Identities = 18/49 (36%), Positives = 31/49 (63%)
Frame = +2
Query: 263 AGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKK 409
AG++ ARTI I+VDP+++ K E + +R+ E + I++PK +K
Sbjct: 42 AGIHKKMARTIDISVDPKKKKKKKERKKEKNERVTETNQKDIIYPKREK 90
>UniRef50_UPI00005A0D5A Cluster: PREDICTED: similar to ribosomal
protein L13 isoform 4; n=1; Canis lupus familiaris|Rep:
PREDICTED: similar to ribosomal protein L13 isoform 4 -
Canis familiaris
Length = 102
Score = 54.0 bits (124), Expect = 1e-06
Identities = 22/30 (73%), Positives = 23/30 (76%)
Frame = +3
Query: 30 NNMIPNGHFHKDWQRFVKTWFNQPARRYRR 119
N MI HFHKDWQR V TWFNQPAR+ RR
Sbjct: 6 NGMILKPHFHKDWQRRVATWFNQPARKIRR 35
>UniRef50_Q8SSC1 Cluster: 60S RIBOSOMAL PROTEIN L13; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13
- Encephalitozoon cuniculi
Length = 163
Score = 50.4 bits (115), Expect = 1e-05
Identities = 27/77 (35%), Positives = 36/77 (46%)
Frame = +3
Query: 24 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 203
KGN+ +PN HF K + + P + R + LRPIVRCPT
Sbjct: 2 KGNHALPNNHFRKTSLKI--RIHHDPETKARVMAEKKLRKAKALFPMPLKKLRPIVRCPT 59
Query: 204 VRYHTKVRAGRGFTLRE 254
++Y+ R GRGFT E
Sbjct: 60 IKYNRNERLGRGFTAAE 76
Score = 42.7 bits (96), Expect = 0.003
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 263 AGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKK 409
AGL+ AR +GIAVD RRR+ + E+ NV+RIK Y ++ ++ K+
Sbjct: 80 AGLDYRHARRLGIAVDLRRRDTNQEAFDKNVERIKTYLGKITIYESVKE 128
>UniRef50_Q018B3 Cluster: Chromosome 05 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 05 contig 1, DNA
sequence - Ostreococcus tauri
Length = 527
Score = 41.5 bits (93), Expect = 0.007
Identities = 20/34 (58%), Positives = 21/34 (61%)
Frame = -3
Query: 256 NSRRVNPLPARTLVWYRTVGHRTIGRNGPAAGRG 155
NS V P P R L YR VG TIGR+ PA GRG
Sbjct: 410 NSSSVKPRPRRVLKLYRCVGGCTIGRSAPATGRG 443
>UniRef50_A2YRI3 Cluster: 60S ribosomal protein L13; n=2; Oryza
sativa|Rep: 60S ribosomal protein L13 - Oryza sativa
subsp. indica (Rice)
Length = 138
Score = 38.7 bits (86), Expect = 0.047
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +3
Query: 183 PIVRCPTVRYHTKVRAGRGFTLREL 257
PIV+C T++Y+ K RAGRGF L EL
Sbjct: 47 PIVQCQTLKYNMKSRAGRGFILEEL 71
>UniRef50_Q6LAB9 Cluster: 60S ribosomal protein L13; n=1;
Arabidopsis thaliana|Rep: 60S ribosomal protein L13 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 87
Score = 33.5 bits (73), Expect = 1.8
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 177 LRPIVRCPTVRYHTKVRAGRGFTLREL 257
LRP+V T++Y+ KV +GFTL EL
Sbjct: 52 LRPVVHGQTLKYNMKVSTXKGFTLEEL 78
>UniRef50_Q54070 Cluster: Poly(3-hydroxybutyrate) depolymerase; n=1;
Streptomyces exfoliatus|Rep: Poly(3-hydroxybutyrate)
depolymerase - Streptomyces exfoliatus (Streptomyces
hydrogenans)
Length = 488
Score = 32.7 bits (71), Expect = 3.1
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 361 SLNIDLQ*FNRLVASTGIYSNSNRSGKYWVQSCGPNS 251
++N DL + R + +Y NS+ SG WV GPNS
Sbjct: 143 AVNDDLATYYRDFGADVVYDNSSASGHAWVSPLGPNS 179
>UniRef50_A6GTV9 Cluster: Putative uncharacterized protein; n=1;
Limnobacter sp. MED105|Rep: Putative uncharacterized
protein - Limnobacter sp. MED105
Length = 130
Score = 32.7 bits (71), Expect = 3.1
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = -3
Query: 379 RSVFLYSLNIDLQ*FNRLVASTGIYSNSNRSGK---YWVQSCGPNSRRVN 239
R+ L ++N+++ N++ A T + + R+GK YWV + G ++VN
Sbjct: 63 RTTLLNAVNLNISRLNKVCADTHVGNREKRNGKGGQYWVNALGGMLKKVN 112
>UniRef50_Q47VA1 Cluster: Voltage-gated chloride channel; n=1;
Colwellia psychrerythraea 34H|Rep: Voltage-gated
chloride channel - Colwellia psychrerythraea (strain 34H
/ ATCC BAA-681) (Vibriopsychroerythus)
Length = 574
Score = 32.3 bits (70), Expect = 4.1
Identities = 12/36 (33%), Positives = 26/36 (72%)
Frame = -2
Query: 134 YSILLSAVSSSWLVKPSFNKSLPILVEMSIRYHIIP 27
+S++L A+ ++ +FNK L ++++ S++YHI+P
Sbjct: 233 FSLILLAIVLG-ILAAAFNKYLVVIIKKSVKYHIVP 267
>UniRef50_Q7KTI0 Cluster: CG17608-PA, isoform A; n=3;
Sophophora|Rep: CG17608-PA, isoform A - Drosophila
melanogaster (Fruit fly)
Length = 271
Score = 32.3 bits (70), Expect = 4.1
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 305 VDPRRRNKSVESLQINVQRIKEYRARLILFPKGKK 409
+D R+ S+ SLQ + I+E +L+LFP+G +
Sbjct: 141 IDRSRKTDSINSLQKEAKAIQERNCKLLLFPEGTR 175
>UniRef50_O22236 Cluster: Putative uncharacterized protein T32N15.6;
n=2; Arabidopsis thaliana|Rep: Putative uncharacterized
protein T32N15.6 - Arabidopsis thaliana (Mouse-ear
cress)
Length = 505
Score = 31.9 bits (69), Expect = 5.4
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = -3
Query: 265 CGPNSRRVNPLPARTLVWYRTVGHRTIGRNGPAAGRGATALAFFILFCFLRYRRAGWL 92
CGPN+ + L L Y+T+G + IG+ A G ALAF +++ F + WL
Sbjct: 425 CGPNNCIIFCLFDVALFGYKTIGFKRIGKE-LAMIYGFLALAFLLMYLFGFFFGVLWL 481
>UniRef50_UPI0000E49D21 Cluster: PREDICTED: similar to LOC495497
protein; n=3; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to LOC495497 protein -
Strongylocentrotus purpuratus
Length = 802
Score = 31.1 bits (67), Expect = 9.5
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = -2
Query: 251 TKSESSTGAYFSMVPNSWASHYRT*RPS-CRTWSYGLSFLYSILLSAVSSSWLVKP-SFN 78
+ + SST + P +H+ T P C WS+ SF Y A L KP SF+
Sbjct: 371 SSTSSSTSSKQETPPCPVDNHFETGPPEKCHKWSFIFSFTYLAFFRAAGYFGLEKPTSFS 430
Query: 77 KSLPILVEMSI 45
+ +L+ + +
Sbjct: 431 NVVQLLLTLKL 441
>UniRef50_A6PBF3 Cluster: Diguanylate cyclase precursor; n=1;
Shewanella sediminis HAW-EB3|Rep: Diguanylate cyclase
precursor - Shewanella sediminis HAW-EB3
Length = 467
Score = 31.1 bits (67), Expect = 9.5
Identities = 23/81 (28%), Positives = 41/81 (50%)
Frame = -3
Query: 418 LQHLFAFREQYKTRSVFLYSLNIDLQ*FNRLVASTGIYSNSNRSGKYWVQSCGPNSRRVN 239
L ++ R+ +R+ L LN++LQ + + TGIY NR +Y+++S R +N
Sbjct: 277 LLYILQLRKTVSSRTAELRQLNLELQHLASIDSLTGIY---NR--RYFIRSLKDACRTMN 331
Query: 238 PLPARTLVWYRTVGHRTIGRN 176
+ TL+ + +TI N
Sbjct: 332 EEASLTLLLFDIDKFKTINDN 352
>UniRef50_Q4WCW8 Cluster: C2H2 finger domain protein, putative; n=7;
Trichocomaceae|Rep: C2H2 finger domain protein, putative
- Aspergillus fumigatus (Sartorya fumigata)
Length = 336
Score = 31.1 bits (67), Expect = 9.5
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -2
Query: 245 SESSTGAYFSMVPNSWASHYRT*RP 171
SE STG+YFS VP S+ RT +P
Sbjct: 35 SEQSTGSYFSAVPTHTTSYSRTPQP 59
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 433,056,651
Number of Sequences: 1657284
Number of extensions: 8317195
Number of successful extensions: 20489
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 20102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20472
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 19389441554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -