Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10593X
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    94   7e-21
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   0.51 
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   3.6  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   4.8  
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    24   8.4  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    24   8.4  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 94.3 bits (224), Expect = 7e-21
 Identities = 42/73 (57%), Positives = 50/73 (68%)
 Frame = +3

Query: 39  IPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHT 218
           +PN HFHKDWQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ 
Sbjct: 9   LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNM 67

Query: 219 KVRAGRGFTLREL 257
           KVRAGRGFTL EL
Sbjct: 68  KVRAGRGFTLEEL 80



 Score = 58.8 bits (136), Expect = 3e-10
 Identities = 30/47 (63%), Positives = 36/47 (76%)
 Frame = +2

Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPK 400
           AAG++   A TIGI VD RRRN+S ESLQ NV+RIK Y A LI+FP+
Sbjct: 82  AAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPR 128


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 28.3 bits (60), Expect = 0.51
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -2

Query: 251  TKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSFLY 132
            T   +STG+Y  M    +   W S   T    C TWSY  S+ Y
Sbjct: 1215 TVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDY 1258


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 21/73 (28%), Positives = 28/73 (38%)
 Frame = -3

Query: 367 LYSLNIDLQ*FNRLVASTGIYSNSNRSGKYWVQSCGPNSRRVNPLPARTLVWYRTVGHRT 188
           +Y++  DL   NR   S G   N N  G  +       S   NP  + T + Y    + T
Sbjct: 1   MYNVRGDL---NRKTPSDG---NVNEIGSMYASRDTSTSSFTNPTDSSTRLLYNNASNAT 54

Query: 187 IGRNGPAAGRGAT 149
                 AAG G T
Sbjct: 55  FSSAALAAGVGGT 67


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 43  LMDISTRIGKDLLKLGLTSQLDDTAES 123
           L+DIS R G+D     L S+L D  +S
Sbjct: 556 LLDISKRKGRDSFVAALNSRLKDIKDS 582


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 365 LFFEH*FAMIQQTCCVYGDLQQFQSF-GQILGS 270
           L F+H  + + QTC  +G  QQ ++   ++ GS
Sbjct: 169 LVFKHDMSRVVQTCVKFGSKQQRETICAELAGS 201


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 334 NRLVASTGIYSNSNRSGKYWVQSCGPNSRRVNP 236
           N  V  +GI+++ N    + V SCG     +NP
Sbjct: 470 NGTVPFSGIWTDMNEPSSFCVGSCGSAMIDLNP 502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,798,111
Number of Sequences: 5004
Number of extensions: 35001
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)