Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10593X
(420 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 97 4e-21
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880... 97 4e-21
06_03_0711 + 23798998-23799106,23799838-23799957,23800181-238003... 29 2.0
02_01_0754 - 5595813-5595887,5595973-5596071,5596136-5596327,559... 29 2.0
02_04_0147 + 20194244-20195717,20195953-20195969 27 4.6
03_01_0564 - 4176177-4178096 27 6.1
12_01_0564 - 4567650-4568063,4568154-4568624,4568722-4568923,457... 27 8.1
03_05_1150 - 30758981-30759778,30759970-30760729,30760823-307609... 27 8.1
03_05_1138 + 30684014-30684386,30684480-30684865,30684870-306849... 27 8.1
>06_01_0110 -
866728-866952,867035-867193,867315-867448,868225-868333
Length = 208
Score = 97.5 bits (232), Expect = 4e-21
Identities = 45/80 (56%), Positives = 53/80 (66%)
Frame = +3
Query: 18 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 197
M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPIV+C
Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60
Query: 198 PTVRYHTKVRAGRGFTLREL 257
T++Y+ K RAGRGFTL EL
Sbjct: 61 QTLKYNMKSRAGRGFTLEEL 80
Score = 65.7 bits (153), Expect = 1e-11
Identities = 29/53 (54%), Positives = 42/53 (79%)
Frame = +2
Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLK 418
AAG+ FA TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP+ + +K
Sbjct: 82 AAGIPKKFAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVK 134
>03_05_0108 -
20887146-20887370,20887460-20887618,20887930-20888063,
20888597-20888705
Length = 208
Score = 97.5 bits (232), Expect = 4e-21
Identities = 45/80 (56%), Positives = 53/80 (66%)
Frame = +3
Query: 18 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 197
M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPIV+C
Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60
Query: 198 PTVRYHTKVRAGRGFTLREL 257
T++Y+ K RAGRGFTL EL
Sbjct: 61 QTLKYNMKSRAGRGFTLEEL 80
Score = 64.5 bits (150), Expect = 3e-11
Identities = 28/53 (52%), Positives = 42/53 (79%)
Frame = +2
Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLK 418
AAG+ +A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP+ + +K
Sbjct: 82 AAGIPKKYAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVK 134
>06_03_0711 +
23798998-23799106,23799838-23799957,23800181-23800317,
23800418-23800579,23800707-23800793,23800872-23800958,
23801317-23801454,23802023-23802214,23802287-23802385,
23802490-23802564
Length = 401
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 311 DLQQFQSFGQILGSILRP 258
DL+ QS GQI+G +LRP
Sbjct: 54 DLKSLQSVGQIIGEVLRP 71
>02_01_0754 -
5595813-5595887,5595973-5596071,5596136-5596327,
5596992-5597129,5597415-5597501,5597583-5597669,
5597795-5597956,5598089-5598225,5598483-5598602,
5600668-5600773
Length = 400
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 311 DLQQFQSFGQILGSILRP 258
DL+ QS GQI+G +LRP
Sbjct: 53 DLKSLQSVGQIIGEVLRP 70
>02_04_0147 + 20194244-20195717,20195953-20195969
Length = 496
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 188 YRT*RPSCRTWSYGLSF 138
Y T RP CR W + LSF
Sbjct: 264 YHTARPGCRYWVFSLSF 280
>03_01_0564 - 4176177-4178096
Length = 639
Score = 27.1 bits (57), Expect = 6.1
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 274 VQSCGPNSRRVNPLPARTLVWYRTVGHRTIGRNGPAAGRGATALAF 137
+ S GP+ RR+ PL A +LV + + R+G + R L+F
Sbjct: 2 ISSAGPHPRRIRPLAAASLVLFLFL---LYSRSGGSLVRSPRVLSF 44
>12_01_0564 -
4567650-4568063,4568154-4568624,4568722-4568923,
4570395-4571104
Length = 598
Score = 26.6 bits (56), Expect = 8.1
Identities = 22/66 (33%), Positives = 34/66 (51%)
Frame = +1
Query: 94 TSQLDDTAESKIE*RKLRP*LHVLQLGRYVL*CDAQLFGTILKYAPVEDSLFVN*GRRIE 273
T +L + S++ ++L L++ LG + D + L Y PVEDSLF+ R+E
Sbjct: 343 TMELHERVYSEMAMKRLLDNLNIKVLGNTTV--DRLPIFSFLIYPPVEDSLFL----RVE 396
Query: 274 PSICPN 291
P C N
Sbjct: 397 PG-CYN 401
>03_05_1150 -
30758981-30759778,30759970-30760729,30760823-30760920,
30761997-30762521
Length = 726
Score = 26.6 bits (56), Expect = 8.1
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = -3
Query: 211 YRTVGHRTIGRNGP-AAGRGATALAFFILF---CFLRYRRAGWLNQVLTNLCQSLW 56
+R + + G G ++ RG T + FF++F F Y G+L +LT + W
Sbjct: 207 FRALHEKEGGDGGKGSSSRGPTRMRFFLIFFFASFAYYALPGYLLPILTFFSWACW 262
>03_05_1138 +
30684014-30684386,30684480-30684865,30684870-30684962,
30684963-30685108,30685211-30685454,30685562-30685666,
30685774-30685956,30686052-30686738
Length = 738
Score = 26.6 bits (56), Expect = 8.1
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 152 YGLS-FLYSILLSAVSSSWLVKPSFNKSLPILVEMSIRYHIIPLA 21
YG + F +++ L A + L+ P F K LP IR+ ++ L+
Sbjct: 178 YGATIFPHNVALGATRQAALLSPRFAKLLPFFTNREIRFCLMFLS 222
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,512,690
Number of Sequences: 37544
Number of extensions: 225725
Number of successful extensions: 486
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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