Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10593X
         (420 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)             109   9e-25
SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                  28   3.6  
SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)              27   6.3  
SB_35774| Best HMM Match : DSPc (HMM E-Value=1e-26)                    27   6.3  
SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)                27   6.3  
SB_38544| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                27   8.3  
SB_23220| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)                 27   8.3  

>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
          Length = 600

 Score =  109 bits (262), Expect = 9e-25
 Identities = 49/78 (62%), Positives = 56/78 (71%)
 Frame = +3

Query: 24  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 203
           K NN+IPNGHFHKDWQR+VKTWF+QP R+ RR+  R               LRPIVRCPT
Sbjct: 4   KRNNIIPNGHFHKDWQRYVKTWFDQPGRKKRRRVARQIKAAKIAPRPVAGSLRPIVRCPT 63

Query: 204 VRYHTKVRAGRGFTLREL 257
            +Y+TKVRAGRGFTL EL
Sbjct: 64  FKYNTKVRAGRGFTLDEL 81



 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 30/47 (63%), Positives = 39/47 (82%)
 Frame = +2

Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPK 400
           AAG+    A TIGIAVD RR+N+S ESLQ NVQR+KEY+++LI+FP+
Sbjct: 83  AAGIPRKVAPTIGIAVDHRRKNRSAESLQANVQRLKEYKSKLIVFPR 129


>SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 1003

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 301 NSNRSGKYWVQSCGPNSRRVNPLPARTLVWYRT 203
           NS+ +G+   QS GP+    NPL  R L ++ T
Sbjct: 214 NSSLTGESEPQSRGPDCTHENPLETRNLAFFST 246


>SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 149 GLSFLYSILLSAVSSSWLVKPSFNKSLPI 63
           G  F  +IL+ A  SS L++P F+ SLP+
Sbjct: 195 GFDFGKAILVKASLSSDLIRPGFDVSLPL 223


>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
          Length = 291

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 170 SCRTWSYGLSFLYSILLSAVSSSWLV 93
           SCRTW    SF+   +L AV S+ L+
Sbjct: 199 SCRTWICSTSFMSPSILVAVGSAVLI 224


>SB_35774| Best HMM Match : DSPc (HMM E-Value=1e-26)
          Length = 1418

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 313 GIYSNSNRSGKYWVQSCGPNSRRVNPLPART 221
           GI     R+   W+  C  N+RR N  PA T
Sbjct: 165 GIDWVDERTAFQWIHKCSDNARRNNQYPAGT 195


>SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)
          Length = 617

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 170 SCRTWSYGLSFLYSILLSAVSSSWLV 93
           SCRTW    SF+   +L AV S+ L+
Sbjct: 137 SCRTWICSTSFMSPSILVAVGSAVLI 162


>SB_38544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 935

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = -2

Query: 173 PSCR--TWSYGLSFLYSILLSAVS 108
           P+CR  TWSY ++ L+ IL  AVS
Sbjct: 304 PTCRVSTWSYNMTCLHIILHYAVS 327


>SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 543

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 331 RLVASTGI-YSNSNRSGKYWVQSCGPNSRRVNPLPARTLVWYRT 203
           R++ S G    NS+ +G+   Q+ GP     NPL  + L ++ T
Sbjct: 171 RVIESKGFKVDNSSLTGESEPQARGPEFTHENPLETKNLAFFST 214


>SB_23220| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)
          Length = 1597

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -3

Query: 325  VASTGIYSNSNRSGKYWVQSCGPNSRRVNPLPARTLVWYRTVGHRTIGR 179
            +AS G   +  R+ K  ++  G     ++   +R L+ YRT  H T G+
Sbjct: 1107 IASNGFAESYVRTFKETMKKMGGEKENLDTKLSRFLLSYRTTPHATTGK 1155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,294,021
Number of Sequences: 59808
Number of extensions: 251073
Number of successful extensions: 680
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)