Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10593X
         (420 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    91   4e-19
U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...    91   4e-19
Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U97196-13|AAK68666.1|  430|Caenorhabditis elegans Altered averme...    27   5.5  
U41113-1|AAC25482.1|  430|Caenorhabditis elegans inhibitory amin...    27   5.5  
Z68337-9|CAA92751.2|  334|Caenorhabditis elegans Hypothetical pr...    26   9.5  
U00048-10|AAB53823.2|  852|Caenorhabditis elegans Related to yea...    26   9.5  

>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 90.6 bits (215), Expect = 4e-19
 Identities = 39/78 (50%), Positives = 50/78 (64%)
 Frame = +3

Query: 24  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 203
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR +VRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 204 VRYHTKVRAGRGFTLREL 257
            RY+TK R GRGF+L+EL
Sbjct: 64  KRYNTKTRLGRGFSLQEL 81


>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score = 90.6 bits (215), Expect = 4e-19
 Identities = 39/78 (50%), Positives = 50/78 (64%)
 Frame = +3

Query: 24  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 203
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR +VRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 204 VRYHTKVRAGRGFTLREL 257
            RY+TK R GRGF+L+EL
Sbjct: 64  KRYNTKTRLGRGFSLQEL 81



 Score = 64.9 bits (151), Expect = 2e-11
 Identities = 30/47 (63%), Positives = 37/47 (78%)
 Frame = +2

Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPK 400
           AAG++   ARTIGIAVD RR NK+ E L+ N  R+KEY+A+LILFPK
Sbjct: 83  AAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPK 129


>Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical
           protein ZK1010.8 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = -3

Query: 160 RGAT-ALAFF-ILFCFLRYRRAGWLNQVLTNL 71
           RGAT A+A + I++CF+++   GW  QV+ N+
Sbjct: 9   RGATIAIAVWNIIYCFIQFGILGWQFQVVKNI 40


>U97196-13|AAK68666.1|  430|Caenorhabditis elegans Altered
           avermectin sensitivityprotein 14, isoform b protein.
          Length = 430

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
 Frame = +1

Query: 79  LKLGLTSQLDDTAESKIE*RKLRP*LHVLQLGRYVL*CDAQLFGTILKYAPVE---DSLF 249
           + LG+T+ L  T ++     KL P  ++  +  ++  C A +FG +L+YA V       F
Sbjct: 286 VSLGVTTLLTMTTQASGINSKLPPVSYIKAVDVWIGVCLAFIFGALLEYAVVNYYGRKEF 345

Query: 250 VN*GR----RIEPSICPND 294
           +   +    RI+  +CP+D
Sbjct: 346 LRKEKKKKTRIDDCVCPSD 364


>U41113-1|AAC25482.1|  430|Caenorhabditis elegans inhibitory amino
           acid receptorsubunit gbr-2B protein.
          Length = 430

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
 Frame = +1

Query: 79  LKLGLTSQLDDTAESKIE*RKLRP*LHVLQLGRYVL*CDAQLFGTILKYAPVE---DSLF 249
           + LG+T+ L  T ++     KL P  ++  +  ++  C A +FG +L+YA V       F
Sbjct: 286 VSLGVTTLLTMTTQASGINTKLPPVSYIKAVDVWIGVCLAFIFGALLEYAVVNYYGRKEF 345

Query: 250 VN*GR----RIEPSICPND 294
           +   +    RI+  +CP+D
Sbjct: 346 LRKEKKKKTRIDDCVCPSD 364


>Z68337-9|CAA92751.2|  334|Caenorhabditis elegans Hypothetical
           protein M7.13 protein.
          Length = 334

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = -2

Query: 305 QQFQSFGQILGSILRP*FTKSESSTGAYFSMVPNSWASHYRT*RPSCRTWSYGLSFLYSI 126
           +QF  + Q++G ++      S  ST  YF  V   +  +  T + S RT +     LYS+
Sbjct: 199 KQFIVYEQVVGIVVNSFIITSSLSTAVYFG-VKTYYKINELTNKVSLRTSNLQSQLLYSL 257

Query: 125 LLSAV 111
           ++  +
Sbjct: 258 VVQTM 262


>U00048-10|AAB53823.2|  852|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 16 protein.
          Length = 852

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 271 QSCGPNSRRVNPLPARTLVWYRTVGHRTIGRN 176
           Q  GP +   +P PA   +W RT+  R + R+
Sbjct: 55  QFSGPIAVAYSPRPASWYIWIRTISGRILKRD 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,854,280
Number of Sequences: 27780
Number of extensions: 192877
Number of successful extensions: 469
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)