Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10593X
(420 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br... 90 5e-19
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br... 90 5e-19
At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D) 88 2e-18
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ... 82 2e-16
At3g44770.1 68416.m04820 hypothetical protein contains Pfam prof... 32 0.18
At2g02060.1 68415.m00141 calcium-dependent protein kinase-relate... 29 0.97
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 29 1.7
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 29 1.7
At5g02760.1 68418.m00218 protein phosphatase 2C family protein /... 27 5.2
At3g15370.1 68416.m01949 expansin, putative (EXP12) similar to e... 27 6.8
At5g49340.1 68418.m06105 expressed protein similar to unknown pr... 26 9.0
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 26 9.0
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 26 9.0
At4g10770.1 68417.m01757 oligopeptide transporter OPT family pro... 26 9.0
At3g27473.1 68416.m03434 DC1 domain-containing protein contains ... 26 9.0
>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 90.2 bits (214), Expect = 5e-19
Identities = 41/78 (52%), Positives = 50/78 (64%)
Frame = +3
Query: 24 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 203
K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRP+V T
Sbjct: 2 KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 204 VRYHTKVRAGRGFTLREL 257
++Y+ KVR G+GFTL EL
Sbjct: 62 LKYNMKVRTGKGFTLEEL 79
Score = 62.9 bits (146), Expect = 8e-11
Identities = 28/53 (52%), Positives = 40/53 (75%)
Frame = +2
Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLK 418
AAG+ A TIGIAVD RR+N+S+E LQ NVQR+K Y+ +L++FP+ + +K
Sbjct: 81 AAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVK 133
>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 90.2 bits (214), Expect = 5e-19
Identities = 41/78 (52%), Positives = 50/78 (64%)
Frame = +3
Query: 24 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 203
K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRP+V T
Sbjct: 2 KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 204 VRYHTKVRAGRGFTLREL 257
++Y+ KVR G+GFTL EL
Sbjct: 62 LKYNMKVRTGKGFTLEEL 79
Score = 62.9 bits (146), Expect = 8e-11
Identities = 28/53 (52%), Positives = 40/53 (75%)
Frame = +2
Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLK 418
AAG+ A TIGIAVD RR+N+S+E LQ NVQR+K Y+ +L++FP+ + +K
Sbjct: 81 AAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVK 133
>At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)
Length = 206
Score = 88.2 bits (209), Expect = 2e-18
Identities = 40/78 (51%), Positives = 50/78 (64%)
Frame = +3
Query: 24 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 203
K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+ R LRP+V T
Sbjct: 2 KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 204 VRYHTKVRAGRGFTLREL 257
++Y+ KVRAG+GFTL EL
Sbjct: 62 LKYNMKVRAGKGFTLEEL 79
Score = 61.3 bits (142), Expect = 3e-10
Identities = 27/52 (51%), Positives = 40/52 (76%)
Frame = +2
Query: 263 AGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLK 418
AG+ A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP+ + +K
Sbjct: 82 AGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVK 133
>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
ribosomal protein L13 (BBC1), Arabidopsis thaliana,
gb:X75162
Length = 206
Score = 81.8 bits (193), Expect = 2e-16
Identities = 38/78 (48%), Positives = 48/78 (61%)
Frame = +3
Query: 24 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 203
K NN+IPNGHF K W+ +VKT FNQPA + RR+ R +RP+V T
Sbjct: 2 KHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQT 61
Query: 204 VRYHTKVRAGRGFTLREL 257
+ Y+ KVRAG+GFTL EL
Sbjct: 62 LTYNMKVRAGKGFTLEEL 79
Score = 60.1 bits (139), Expect = 6e-10
Identities = 26/53 (49%), Positives = 39/53 (73%)
Frame = +2
Query: 260 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLK 418
AAG+ A TIGI+VD R+N+S+E Q NVQR+K Y+A+L++FP+ + +K
Sbjct: 81 AAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVK 133
>At3g44770.1 68416.m04820 hypothetical protein contains Pfam profile
PF04776: Protein of unknown function (DUF626)
Length = 505
Score = 31.9 bits (69), Expect = 0.18
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = -3
Query: 265 CGPNSRRVNPLPARTLVWYRTVGHRTIGRNGPAAGRGATALAFFILFCFLRYRRAGWL 92
CGPN+ + L L Y+T+G + IG+ A G ALAF +++ F + WL
Sbjct: 425 CGPNNCIIFCLFDVALFGYKTIGFKRIGKE-LAMIYGFLALAFLLMYLFGFFFGVLWL 481
>At2g02060.1 68415.m00141 calcium-dependent protein kinase-related /
CDPK-related contains TIGRFAM TIGR01557: myb-like
DNA-binding domain, SHAQKYF class; contains Pfam
PF00249: Myb-like DNA-binding domain; similar to CDPK
substrate protein 1; CSP1 (GI:6942190) [Mesembryanthemum
crystallinum].
Length = 626
Score = 29.5 bits (63), Expect = 0.97
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 154 ATALAFFILFCFLRYRRAGWLNQV 83
A L FFI FCF YR +G+L V
Sbjct: 266 AVLLLFFICFCFSLYRTSGYLRIV 289
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 28.7 bits (61), Expect = 1.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 311 DLQQFQSFGQILGSILRP 258
DL+ QS GQI+G +LRP
Sbjct: 52 DLKSLQSVGQIIGEVLRP 69
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 28.7 bits (61), Expect = 1.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 311 DLQQFQSFGQILGSILRP 258
DL+ QS GQI+G +LRP
Sbjct: 52 DLKSLQSVGQIIGEVLRP 69
>At5g02760.1 68418.m00218 protein phosphatase 2C family protein /
PP2C family protein similar to Ser/Thr protein
phosphatase 2C (PP2C6) (GI:15020818) [Arabidopsis
thaliana]; similar to protein phosphatase 2C
(GI:3608412) [Mesembryanthemum crystallinum]; contains
Pfam PF00481 : Protein phosphatase 2C domain
Length = 370
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -3
Query: 277 WVQSCGPNSRRVNPLPARTLVWYRTVGHRTIG 182
W G ++NP L WY+ +G T G
Sbjct: 6 WRIGAGMERSKINPTKVDGLTWYKDLGLHTFG 37
>At3g15370.1 68416.m01949 expansin, putative (EXP12) similar to
expansin GI:11191999 from [Lycopersicon esculentum];
alpha-expansin gene family, PMID:11641069
Length = 252
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 299 FQSFGQILGSILRP*FTKSESSTGAYFSMVPNSW 198
+QS G + G L T ++S T + ++VP+SW
Sbjct: 205 WQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSW 238
>At5g49340.1 68418.m06105 expressed protein similar to unknown
protein (emb|CAB82953.1)
Length = 457
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 220 LVWYRTVGHRTIGRNGPAAGRGATALA 140
+ WYRT GH ++ R PA RG + A
Sbjct: 390 MTWYRTDGHPSVYRQ-PADPRGTSPAA 415
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 26.2 bits (55), Expect = 9.0
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = -2
Query: 251 TKSESSTGAYFSMVPNSWASHYRT*RPSCRTWSYGLSFLYSILLSAVSSSWLVKPSFNKS 72
T E + FS V SHY+ R SCR S S L+ +++ +K N
Sbjct: 635 TWPEEKLASSFSPVKAIRRSHYKFLRSSCRRTSES-SHLWGLVIVTGGWDGRIKLFHNYG 693
Query: 71 LPILV 57
LP+ V
Sbjct: 694 LPVPV 698
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 26.2 bits (55), Expect = 9.0
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = -2
Query: 251 TKSESSTGAYFSMVPNSWASHYRT*RPSCRTWSYGLSFLYSILLSAVSSSWLVKPSFNKS 72
T E + FS V SHY+ R SCR S S L+ +++ +K N
Sbjct: 631 TWPEEKLASSFSPVKAIRRSHYKFLRSSCRRTSES-SHLWGLVIVTGGWDGRIKLFHNYG 689
Query: 71 LPILV 57
LP+ V
Sbjct: 690 LPVPV 694
>At4g10770.1 68417.m01757 oligopeptide transporter OPT family
protein similar to oligopeptide transporter Opt1p
[Candida albicans] GI:2367386; contains Pfam profile
PF03169: OPT oligopeptide transporter protein
Length = 766
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Frame = -3
Query: 133 ILFCFLRYRRAGWLNQVLTNLC----QSLWKC 50
++ CF+ A WL + + N+C S+W C
Sbjct: 569 LISCFVYLTTAWWLMETIPNICDSVTNSVWTC 600
>At3g27473.1 68416.m03434 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 662
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 307 YSNSNRSGKYWVQSCGPNSRRVNP 236
Y + N SGKYW C R NP
Sbjct: 546 YGDENASGKYWCDIC---ERETNP 566
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,324,035
Number of Sequences: 28952
Number of extensions: 181279
Number of successful extensions: 446
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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