Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10592
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   142   6e-35
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   142   7e-35
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac...    26   5.7  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  142 bits (344), Expect = 6e-35
 Identities = 69/102 (67%), Positives = 83/102 (81%), Gaps = 3/102 (2%)
 Frame = +2

Query: 260 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 439
           GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+IPGLTD  VP+RLGPKRAS
Sbjct: 80  GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKRLGPKRAS 139

Query: 440 KIRKLFNLSKEDDVRRYVVKRVLQLRKEKK---TLNPDIRHL 556
           KIR+ FNLSKEDDVR++V++R +  +KE K   T  P I+ L
Sbjct: 140 KIRRFFNLSKEDDVRQFVIRREVVPKKEGKKPYTKAPKIQRL 181



 Score =  111 bits (268), Expect = 9e-26
 Identities = 55/98 (56%), Positives = 67/98 (68%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 204 FPMKQGVLTNSRVRLLMQRATHVTDRAAMERENVNQFV 317
           FPM QGVL   RVRLL+ RA H   R   + E   + V
Sbjct: 61  FPMFQGVLLPHRVRLLL-RAGHPCYRPRRDGERKRKSV 97



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 29/72 (40%), Positives = 38/72 (52%)
 Frame = +1

Query: 493 RQTRAPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 672
           R+   P KEGK   KP  KAPKIQRLVTP  LQ                    AE+A+L+
Sbjct: 159 RREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLM 215

Query: 673 AQRKKESKVRRQ 708
           A+R  E+K +++
Sbjct: 216 AKRVAEAKQKKE 227


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  142 bits (343), Expect = 7e-35
 Identities = 68/102 (66%), Positives = 83/102 (81%), Gaps = 3/102 (2%)
 Frame = +2

Query: 260 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 439
           GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+IPGLTD  VP+RLGPKRAS
Sbjct: 80  GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPKRLGPKRAS 139

Query: 440 KIRKLFNLSKEDDVRRYVVKRVLQLRKEKK---TLNPDIRHL 556
           KIR+ FNLSKEDDVR++V++R +  +KE K   T  P I+ L
Sbjct: 140 KIRRFFNLSKEDDVRQFVIRREVVPKKEGKKPYTKAPKIQRL 181



 Score =  111 bits (268), Expect = 9e-26
 Identities = 55/98 (56%), Positives = 67/98 (68%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 204 FPMKQGVLTNSRVRLLMQRATHVTDRAAMERENVNQFV 317
           FPM QGVL   RVRLL+ RA H   R   + E   + V
Sbjct: 61  FPMFQGVLLPHRVRLLL-RAGHPCYRPRRDGERKRKSV 97



 Score = 49.6 bits (113), Expect = 5e-07
 Identities = 30/72 (41%), Positives = 38/72 (52%)
 Frame = +1

Query: 493 RQTRAPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 672
           R+   P KEGK   KP  KAPKIQRLVTP  LQ                    AE+A+L+
Sbjct: 159 RREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLM 215

Query: 673 AQRKKESKVRRQ 708
           A+R  E+K +R+
Sbjct: 216 AKRVAEAKQKRE 227


>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 422 GPKRASKIRKLFNLSKEDDVRRYVVKRVLQLRKEKKTLNPDIR 550
           GP+R   IR+ +     D++++Y  K   Q   EKK     +R
Sbjct: 71  GPERFEMIRQKYKALTADEIQKYKNKLQEQFDAEKKRFMETLR 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,104,194
Number of Sequences: 5004
Number of extensions: 60697
Number of successful extensions: 159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)