Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10587
         (495 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB) si...   106   7e-24
At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC) id...   103   5e-23
At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA) si...    46   1e-05
At2g16100.1 68415.m01846 hypothetical protein                          29   2.3  
At4g29090.1 68417.m04163 reverse transcriptase, putative / RNA-d...    28   4.0  
At4g08840.1 68417.m01453 pumilio/Puf RNA-binding domain-containi...    27   5.3  
At4g30990.1 68417.m04398 expressed protein ; expression supporte...    27   9.2  

>At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB)
           similar to 60S RIBOSOMAL PROTEIN L27A GB:P49637
           GI:1710530 from [Arabidopsis thaliana]
          Length = 146

 Score =  106 bits (255), Expect = 7e-24
 Identities = 48/81 (59%), Positives = 54/81 (66%)
 Frame = +1

Query: 13  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 192
           MAT+ KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 193 FHFRKNKNFCPVLNLDKLWTL 255
           FH  +NK FCP++NLDKLW+L
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSL 81


>At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC)
           identical to 60S ribosomal protein L27A GB:P49637
           [Arabidopsis thaliana]
          Length = 146

 Score =  103 bits (248), Expect = 5e-23
 Identities = 47/81 (58%), Positives = 52/81 (64%)
 Frame = +1

Query: 13  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 192
           M T  KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 193 FHFRKNKNFCPVLNLDKLWTL 255
           FH  +NK FCP++NLDKLW+L
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSL 81


>At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA)
           similar to GB:BAA96068 from [Panax ginseng]
          Length = 104

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
 Frame = +1

Query: 13  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGK--LGM 186
           M TS+KKTR LR HVS                       H R    +  PG  G   +GM
Sbjct: 1   MTTSRKKTRNLREHVSVG---------------------HGRFGKHRKLPGSRGNAGVGM 39

Query: 187 RNFHFRKNKNFCPVLNLDKLWTLSLNR 267
           R FH  +NK +C ++NLDKLW++ L +
Sbjct: 40  RYFHKLRNKFYCQIVNLDKLWSMVLGK 66


>At2g16100.1 68415.m01846 hypothetical protein 
          Length = 250

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 126 APSQNQHGQVPSWILWQTW 182
           +P  +Q  Q+P WILW+ W
Sbjct: 20  SPRTSQFHQLPLWILWRIW 38


>At4g29090.1 68417.m04163 reverse transcriptase, putative /
           RNA-dependent DNA polymerase, putative similar to
           reverse transcriptase [Arabidopsis thaliana] GI:976278;
           contains Pfam profile PF00075: RNase H
          Length = 575

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +3

Query: 129 PSQNQHGQVPSWILWQTWYEKFPL-*KEQEFLSSFELR*ALDIVSEQTRLKYASAPDGKV 305
           P   +  Q+  W+LW+ W  +  L  + +EF +   LR A D + E+ R++  +   G  
Sbjct: 351 PQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDL-EEWRIRTEAESCGTK 409

Query: 306 PVIN 317
           P +N
Sbjct: 410 PQVN 413


>At4g08840.1 68417.m01453 pumilio/Puf RNA-binding domain-containing
           protein contains similarity to RNA binding protein PufA
           [Dictyostelium discoideum] gi|5106561|gb|AAD39751
          Length = 524

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +1

Query: 193 FHFRKNKNFCPVLNLDKLWTLSLNRRG*SMHLLQ 294
           FHF  ++   P LNL KL T SL   G  M L Q
Sbjct: 34  FHFSGDRTTNPFLNLRKLDTTSLMADGVDMGLCQ 67


>At4g30990.1 68417.m04398 expressed protein ; expression supported by
            MPSS
          Length = 2138

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 169  FGKLGMRNFHFRKNKNFCPVLNLDKLWTLSLNRRG*SMHLLQ 294
            F   G  +  + +N NF     +D + TLS N++   +H++Q
Sbjct: 967  FWSSGKSSLDYFQNSNFLKYFTVDTISTLSRNQKFGFLHVIQ 1008


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,830,019
Number of Sequences: 28952
Number of extensions: 194759
Number of successful extensions: 480
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)