Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10586
         (872 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    28   0.098
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    25   1.2  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   1.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   1.2  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   4.9  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   8.5  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   8.5  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 28.3 bits (60), Expect = 0.098
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = +2

Query: 590 TVKVWHLTNCKLKINHLGHSGYLNTVTVSPD----GSLCASGGKDMKAMLWDLNDGKHLH 757
           T+ +W +      +  +  SG  N V +SP     GSL A        +++ ++  K+  
Sbjct: 283 TISLWFMAWTPYLV--INFSGIFNLVKISPLFTIWGSLFAKANAVYNPIVYGISHPKYRA 340

Query: 758 TLTTMISSLPCASQPT 805
            L     SL CA++P+
Sbjct: 341 ALFAKFPSLACAAEPS 356


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 7/25 (28%), Positives = 20/25 (80%)
 Frame = -1

Query: 443 TRHYLTVVN*EGYREYILSMVLESS 369
           +++Y+T+++  G+R++I +M+  +S
Sbjct: 10  SKYYVTIIDAPGHRDFIKNMITGTS 34


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 7/25 (28%), Positives = 20/25 (80%)
 Frame = -1

Query: 443 TRHYLTVVN*EGYREYILSMVLESS 369
           +++Y+T+++  G+R++I +M+  +S
Sbjct: 26  SKYYVTIIDAPGHRDFIKNMITGTS 50


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 7/25 (28%), Positives = 20/25 (80%)
 Frame = -1

Query: 443 TRHYLTVVN*EGYREYILSMVLESS 369
           +++Y+T+++  G+R++I +M+  +S
Sbjct: 83  SKYYVTIIDAPGHRDFIKNMITGTS 107


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 7/24 (29%), Positives = 19/24 (79%)
 Frame = -1

Query: 440 RHYLTVVN*EGYREYILSMVLESS 369
           ++Y+T+++  G+R++I +M+  +S
Sbjct: 84  KYYVTIIDAPGHRDFIKNMITGTS 107


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 560 PIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTV 673
           P  +S  W +    W L  CKL+      S Y++ +T+
Sbjct: 88  PFELSVFWQQYPWQWGLGICKLRAYVSETSSYVSVLTI 125


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 463 NSGTPLRSASIPSKMRTQRLGVMC 534
           NS +PL S + P  ++    G+MC
Sbjct: 54  NSKSPLLSCACPDGLKLLSDGLMC 77


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 463 NSGTPLRSASIPSKMRTQRLGVMC 534
           NS +PL S + P  ++    G+MC
Sbjct: 54  NSKSPLLSCACPDGLKLLSDGLMC 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 268,497
Number of Sequences: 438
Number of extensions: 6451
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)